Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g03612 ATGCCGAACACCTCACAGGTTATTACATGCAAAGCTGCAATATGCTGGGGGCTAGGAAAGCCTGTGACAGTGGAAGAAATACAAGTAGATCCACCAAAAGCAAATGAAGTTAGAGTTAAGATGCTTTGTGCCAGTTTATGCCACACAGACATCTCAAGCACTAAAGGATTCCCACATGGTAATTTTCCTCTAGCACTTGGCCATGAAGGAGTTGGAACTAATTTCATGTATTGCATAAATTTCAGTGTTGTAGAAAGTGTTGGTGATCGAGTGACAAATGTGAAAGAAGGGGATATGATAATTCCAACATATGTAGGAGAGTGTCAAGAATGTGAGAATTGTGTTTCAGGAAAAACCAATGTGTGTCTCACATACCCTATAGCAATAGGAGTGACTGGTCTAATGCCAGATAACACTTCAAGGATGTCCATAAAAGGCCAAAAACTATACCACATTTTTAGTTCTGCCACATGGTCAGAGTACATGGTTACTGATGCCAACTACCTTCTCAAAGTTGATCCAAGCATTAATCTAGCCCATGCTAGTTTCATCTCATGTGGTTTTTCAACTGGTTTTGGAGCTGCTTGGAAGGAAGCCAAGGTTGAAAGTGGATCAAGTGTTGCTGTTTTTGGTCTTGGAGCTGTTGGATTAGGGGCTATAAGCGGAGCTAAAATGATGGGAGCAACTAAGATAATTGGGATTGACAAAAATGAGATGAAGAGAGAAAAAGGAGAAGCTTTTGGAATGACTGACTTTATAAATCCTAGTGATTCTGCTAAATCTGCTTCAGAATTGGTCAAGGAACTGAGTGGTGGAATGGGTGTGGATTATTCCATTGAGTGCACTGGAGTTCCCTCTTTGCTTACAGAATCTGTGGAAGCCACAAAATTGGGAACAGGTAAGACAATAGCAGTTGGTATAGGAGCTGAAACTGTTGTGCAGTTTGATCTTCTTGCCCTTTTGTTTGGTAGAACTTTGAAAGGTTCTGTTTTTGGAGGGCTAAAAAACTTATCGGACCTTTCCATCATAGCTGACAAATGTGTGAAAGAGGAACTCCCTCTTCAGGAACTATTCACCCATGAGGTCCCATTATCTGATATAAACAAAGCATTTGAGATATTAAAGGAACCCGATTGTGTGAAAGTGATCATCAAGATGTGA 1161 0.4057 MPNTSQVITCKAAICWGLGKPVTVEEIQVDPPKANEVRVKMLCASLCHTDISSTKGFPHGNFPLALGHEGVGTNFMYCINFSVVESVGDRVTNVKEGDMIIPTYVGECQECENCVSGKTNVCLTYPIAIGVTGLMPDNTSRMSIKGQKLYHIFSSATWSEYMVTDANYLLKVDPSINLAHASFISCGFSTGFGAAWKEAKVESGSSVAVFGLGAVGLGAISGAKMMGATKIIGIDKNEMKREKGEAFGMTDFINPSDSAKSASELVKELSGGMGVDYSIECTGVPSLLTESVEATKLGTGKTIAVGIGAETVVQFDLLALLFGRTLKGSVFGGLKNLSDLSIIADKCVKEELPLQELFTHEVPLSDINKAFEILKEPDCVKVIIKM. 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g03612 386 Gene3D - 191 329 - -
Seca2g03612 386 Pfam Zinc-binding dehydrogenase 214 334 IPR013149 -
Seca2g03612 386 Pfam Alcohol dehydrogenase GroES-like domain 35 172 IPR013154 -
Seca2g03612 386 FunFam alcohol dehydrogenase 1-like isoform X1 18 190 - -
Seca2g03612 386 PANTHER ALCOHOL DEHYDROGENASE 6 378 - -
Seca2g03612 386 SUPERFAMILY GroES-like 4 202 IPR011032 -
Seca2g03612 386 FunFam S-(hydroxymethyl)glutathione dehydrogenase 191 329 - -
Seca2g03612 386 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 177 345 IPR036291 -
Seca2g03612 386 CDD liver_alcohol_DH_like 8 385 - -
Seca2g03612 386 Gene3D - 13 381 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g03612 Seca-Chr2 111715062 111718543 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g03612 35 378 Monolignol Biosynthesis Gene Families AT2G21730 27.066 7.77e-16 76.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g03612 K00121 - gmx:100798341 618.616