Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g03610 ATGTACTCCAAGCGTGGGTTATTAGAAAGCGTTCTTCACTGTTATTCTTCTTTCATTAATTCAGGCCATTTTCCTAATGAGTTCACTTTTTCAATCACTTTGTCTGATTGTGCAAAACTTGAGAATATTGGCTTTGGCAAGTTAGTTCATCGTTGTGTTATTAAGAGAGGTTTTGAATTCATTTCATTTTGTCAAGGTCTTCTTATCCATCTCTATTCCAAATGCAACTTTCTAAGTTCTGCTTGCACAATATTTAACTCCACATCCCACTTGGACACTGTTTCTTGCACCGTTTTAATCTTTGGTTATGTTCAAGTTGGTTTGCCAGAGGAAGCACTCCACGTGTTTGACAAAATGTGTAATACTTGTTATCCAGACCAAGTGGCATTTATCACTGTGTTAAATGCTTACATGGCTTCAAGAAAGTTGGATGATGCATGCCAATGGCTTGAACATATGCATATGCATATGCCTACTTACAATATTGTGGACAGGGACACGAATATACTTACTCGGATCTACCAGCCTACTGAGGGAGAAGATAGCCGTGTGAATATTGTTGACCTTGAGAAACCTGTGAGCTCTGAGGTTCTCCTTGTCATCATTTTCTTTCATGGTGGAAGCTTTGCACACTCTTCAGCTAACAGTGCTATATATGACACCCTGTGCTACAGAGAAAATTATCACAGGCACACAAGGTGTTTGTATTGGGAGGGAAAGCTTATCCTCTCATTTGTTGATCAATGGTGGTTTGGGTTTATTTTTGACTGGGTTGTTCCTTTGTACAAAGTGGGAGATGCATTAGAATAG 810 0.3914 MYSKRGLLESVLHCYSSFINSGHFPNEFTFSITLSDCAKLENIGFGKLVHRCVIKRGFEFISFCQGLLIHLYSKCNFLSSACTIFNSTSHLDTVSCTVLIFGYVQVGLPEEALHVFDKMCNTCYPDQVAFITVLNAYMASRKLDDACQWLEHMHMHMPTYNIVDRDTNILTRIYQPTEGEDSRVNIVDLEKPVSSEVLLVIIFFHGGSFAHSSANSAIYDTLCYRENYHRHTRCLYWEGKLILSFVDQWWFGFIFDWVVPLYKVGDALE. 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g03610 269 Gene3D Tetratricopeptide repeat domain 1 183 IPR011990 GO:0005515
Seca2g03610 269 ProSitePatterns Lipolytic enzymes "G-D-X-G" family, putative histidine active site. 201 217 IPR002168 GO:0016787
Seca2g03610 269 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 2 154 IPR046960 GO:0003723|GO:0009451
Seca2g03610 269 Pfam PPR repeat 94 120 IPR002885 -
Seca2g03610 269 Pfam PPR repeat 128 154 IPR002885 -
Seca2g03610 269 NCBIfam pentatricopeptide repeat 94 121 IPR002885 -
Seca2g03610 269 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 92 126 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g03610 Seca-Chr2 111660554 111661363 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g03610 162 267 Carbohydrate Esterase AT3G05120 41.463 1.49e-20 87.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g03610 - - gmx:100800995 188.734