LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca2g03610	ATGTACTCCAAGCGTGGGTTATTAGAAAGCGTTCTTCACTGTTATTCTTCTTTCATTAATTCAGGCCATTTTCCTAATGAGTTCACTTTTTCAATCACTTTGTCTGATTGTGCAAAACTTGAGAATATTGGCTTTGGCAAGTTAGTTCATCGTTGTGTTATTAAGAGAGGTTTTGAATTCATTTCATTTTGTCAAGGTCTTCTTATCCATCTCTATTCCAAATGCAACTTTCTAAGTTCTGCTTGCACAATATTTAACTCCACATCCCACTTGGACACTGTTTCTTGCACCGTTTTAATCTTTGGTTATGTTCAAGTTGGTTTGCCAGAGGAAGCACTCCACGTGTTTGACAAAATGTGTAATACTTGTTATCCAGACCAAGTGGCATTTATCACTGTGTTAAATGCTTACATGGCTTCAAGAAAGTTGGATGATGCATGCCAATGGCTTGAACATATGCATATGCATATGCCTACTTACAATATTGTGGACAGGGACACGAATATACTTACTCGGATCTACCAGCCTACTGAGGGAGAAGATAGCCGTGTGAATATTGTTGACCTTGAGAAACCTGTGAGCTCTGAGGTTCTCCTTGTCATCATTTTCTTTCATGGTGGAAGCTTTGCACACTCTTCAGCTAACAGTGCTATATATGACACCCTGTGCTACAGAGAAAATTATCACAGGCACACAAGGTGTTTGTATTGGGAGGGAAAGCTTATCCTCTCATTTGTTGATCAATGGTGGTTTGGGTTTATTTTTGACTGGGTTGTTCCTTTGTACAAAGTGGGAGATGCATTAGAATAG	810	0.3914	MYSKRGLLESVLHCYSSFINSGHFPNEFTFSITLSDCAKLENIGFGKLVHRCVIKRGFEFISFCQGLLIHLYSKCNFLSSACTIFNSTSHLDTVSCTVLIFGYVQVGLPEEALHVFDKMCNTCYPDQVAFITVLNAYMASRKLDDACQWLEHMHMHMPTYNIVDRDTNILTRIYQPTEGEDSRVNIVDLEKPVSSEVLLVIIFFHGGSFAHSSANSAIYDTLCYRENYHRHTRCLYWEGKLILSFVDQWWFGFIFDWVVPLYKVGDALE.	270

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca2g03610	269	Gene3D	Tetratricopeptide repeat domain	1	183	IPR011990	GO:0005515
	Seca2g03610	269	ProSitePatterns	Lipolytic enzymes "G-D-X-G" family, putative histidine active site.	201	217	IPR002168	GO:0016787
	Seca2g03610	269	PANTHER	PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN	2	154	IPR046960	GO:0003723\|GO:0009451
	Seca2g03610	269	Pfam	PPR repeat	94	120	IPR002885	-
	Seca2g03610	269	Pfam	PPR repeat	128	154	IPR002885	-
	Seca2g03610	269	NCBIfam	pentatricopeptide repeat	94	121	IPR002885	-
	Seca2g03610	269	ProSiteProfiles	Pentatricopeptide (PPR) repeat profile.	92	126	IPR002885	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca2g03610	Seca-Chr2	111660554	111661363	Transposed

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Seca2g03610	162	267	Carbohydrate Esterase	AT3G05120	41.463	1.49e-20	87.8

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca2g03610	-		-	gmx:100800995	188.734

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