Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g03600 ATGACTGAGCCACAAGTTAGTAGTGATCATCATGGCACTTCTAGTTCTGGAGCTAAGCGTAAAGGCATGGTTAATTCAAAGCGTGGCATGGCATCATCATCATCATCACAAGCTCCACCATGTGGGGCATGCAAGTTCCTAAGGAGAAAGTGCATTAATGGGTGCATATTTGCACCTTACTTTGGTTCAGACCAGGGTGCAGCACTATTTGCAGCTGTGCACAAAGTGTTTGGTGCAAGCAATGTGTCAAAGCTTTTGTTGCATATTCCGGTCAATCGCCGCCATGAAGCGGTGATTACTATATCATATGAGGCTCAAGCAAGGTTGTCTGATCCGGTTTATGGTTGTGTGTCCACCATTCTTGCTTTGCAACAACAGGTTGTGGCATCTTTGCAAGGGGAGCTTGATATGGTGCAAACTCAACTGGTAAATAGTAGGTTTGCATATGCAAATATTTTTCAGCAACAACAACAACCAAACATCAATGTAGCTTTACAACCATCGTACTCCAACAATTCCATATCTGCTTCCACCAACCTTATGAACATGAGTTCCTACTTGAACCCTATAGGTTTTGACCACCATGCTATGGACACAACACCCTCATCACATAGTTTCGAGCCTCTTCAACTCTCTCTCTTATCCCAAGATGAAGACGATGAGGAAGAAAGCAAGATCCCCCAAACTTTCAACCATGAGATAGTAACTAATCGTCAATAA 720 0.4319 MTEPQVSSDHHGTSSSGAKRKGMVNSKRGMASSSSSQAPPCGACKFLRRKCINGCIFAPYFGSDQGAALFAAVHKVFGASNVSKLLLHIPVNRRHEAVITISYEAQARLSDPVYGCVSTILALQQQVVASLQGELDMVQTQLVNSRFAYANIFQQQQQPNINVALQPSYSNNSISASTNLMNMSSYLNPIGFDHHAMDTTPSSHSFEPLQLSLLSQDEDDEEESKIPQTFNHEIVTNRQ. 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g03600 239 ProSiteProfiles LOB domain profile. 39 142 IPR004883 -
Seca2g03600 239 PANTHER LOB DOMAIN CONTAINING PROTEIN 36 203 - -
Seca2g03600 239 MobiDBLite consensus disorder prediction 215 239 - -
Seca2g03600 239 Pfam Lateral organ boundaries (LOB) domain 40 139 IPR004883 -
Seca2g03600 239 MobiDBLite consensus disorder prediction 1 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g03600 Seca-Chr2 111494657 111496605 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g03600 40 224 AS2 family AT3G03760 64.500 4.12e-71 217
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Seca2g03600 LOB 1.1e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g03600 - - ahf:112698228 288.5