Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g03599 ATGGTGCTAATGGGAAATAAAGGCTATCTCTCTTTGTTTCTGGTGTTGGTTACTCTTTTACTTTCTATCTATCATTCAGAGCAGCTTCAATCCTCCAACTCTCAGACCCTTCTAAGAATTCAACAGCTATTGAACTTTCCTGCTGCTTTAAGCAAATGGAGTAACAACACAGACTTTTGCAGCACAGATTCAAACTCTTCTCTTAATGTAGTATGCTATGAGGACACCATAACCCAATTGCACATAATAGGTGAAAGAAGTGCTCCACTTAGAAATTTCTCAATAGATTCCTTTGTCACAACACTGGTAAAGCTTCCCAGTTTGAAAGTCCTCACATTGGTTTCTCTTGGTATATGGGGTCCATTGCCTGGTAAGATAGCTCGTCTTTCATCATTGGAAATAGTTAATGTGAGTTCAAATTATCTCTATGGTTCCATCCCTCAGGAACTTTCATCACTGTCAAATCTTCAAACACTCATTCTTGACAACAACAACTTTGGTGGCCAGATTCCTGATTGGTTTGATTCACTTCCAGCCTTAACTGTGTTAAGTTTGAAAAACAATTTGTTCAATGGATCTCTACCAAATTCACTCAGTAGCTTGGAGAATTTGAGAGTTCTTTCACTTTCTCATAATCACTTTTATGGGGTAGTGCCTGATTTGAGCCGTTTGACAAATCTTCAAGTGCTGGAATTAGATGATAATGCTTTTGGACCTGAGTTTCCTCATCTTGGTAACAAGTTGGTTGCTCTTGTGCTAAGAGGTAATAGGTTCAGGTCTGGTATTCCTGCTGAAGTAAGCTCATATTTTCAGCTTCAGAGATTGGATATCTCATCAAATTCATTTGTGGGGCCTTTCCAGCCAGCATTGTTGTCACTACCTTCTATTACATATCTGAACATTTCTGGGAACAAATTAACTGGGATGCTTTTTGAGAATCTGTCTTGCAATTATGAGCTTGAAGTAGTTGATTTATCCTCAAATCTTTTGACTGGGAGCTTACCTAGATGTTTGCTGTCAAATTCCAGTGATAGGACTTTCCTGTATGCTAGAAATTGTCTAGAGAAAACGAATCAAAATCAGAACCCACCACCCTTTTGCCACACTGAAGCCTTAGCTGTGGGAATATTACCTGAAGGAAAGAAGCACAAACAAGTATCAAAGGTAGTTCTTTCCCTTGGCATAGTAGGTGGGACTCTTGGAGGAGTAGCACTTTGTTTGCTGATTTTCTTTATTGTTGGAAGAGGAAATGCCAAAAGCAAAATGAAGAATCCTCCAACAAGATTAATATCAGAGAATGCAGCTTCTGCATACACCTCTAAGTTGCTTTCTGATGCAAGGTATATATCTCAAACAAAGAAGTTGGGAGCAGTTGGCCTGCCAACTTATCGAAGTTTCTCATTAGAAGAAATTGAGGTAGCTACAAACAACTTTGATACAGCTTCTTTAATGGGCGAGGATTCTTATGGGCAGATGTGCAGAGGTCAGCTGAAGAATGGGACACTTGTTGCCATTAGATGTATCAAAATGAAAAAAAGATACAGCACTCAAAACTTTATGCCTCACATAGAGCTGATATCAAAACTTAGGCATCGTCATTTAGCCAGCGCTCTTGGACACTGCTTTGAATGTTCTTTAGATGATTCAAGTGTCAGCAAAATATTTCTTGTCTTCGAATATGTACCGAATGGCACACTCAGGAGCTGGATCTCTGATGAACATGCTAGAAAAACCTTGAGTTGGACTCAACGCATAGGAGCTGCAATTGGTGTAGCAAAGGGAATCCAATTTTTGCATACAGGAATTGTCCCTGGTGTATATTCCAACAATCTCAAAATAGAAGATGTTTTATTGGATCAGAATCTTGTTGCAAAAATCAGCAGTTATAACCTGCCTCTCTTATCTAACATTGGAAAGGTTCGGCATGGAAATTCTTCCAATGGATTAAAAAATTCTACCGGAAATAAAAGTGCAAAGCAAGAAGATAAGTCTGACATATACGATTTTGGAGTAATACTATTGGAACTCATTCTAGGAAGGACAATAAAGACAACAAATGATGCAGATGCTTTTAAGGATCTGTTGCAAGCAAGCATAGGAGCTGATGATGAGGCTAAGAGGAGCATTGTTGATCCAGCAATTCGCAAGGCATGCTTGGATCAATCATTGAAGACAATGATAGAGATTTGTGTGAGGTGCCTGGCCAAAGATTCAGCAGATAGGCCCTCTATAGAGGATGTTTTGTGGAATTTGCAGTTTGCTGCTCAAGTTCAAGATGCTTGGAGAGGAGATTCTCAAAGTAGTGAGGGATCACCAGGCTCACCTTTAGAGTCTCGAAGATTGCCCTTCCATTAG 2355 0.3949 MVLMGNKGYLSLFLVLVTLLLSIYHSEQLQSSNSQTLLRIQQLLNFPAALSKWSNNTDFCSTDSNSSLNVVCYEDTITQLHIIGERSAPLRNFSIDSFVTTLVKLPSLKVLTLVSLGIWGPLPGKIARLSSLEIVNVSSNYLYGSIPQELSSLSNLQTLILDNNNFGGQIPDWFDSLPALTVLSLKNNLFNGSLPNSLSSLENLRVLSLSHNHFYGVVPDLSRLTNLQVLELDDNAFGPEFPHLGNKLVALVLRGNRFRSGIPAEVSSYFQLQRLDISSNSFVGPFQPALLSLPSITYLNISGNKLTGMLFENLSCNYELEVVDLSSNLLTGSLPRCLLSNSSDRTFLYARNCLEKTNQNQNPPPFCHTEALAVGILPEGKKHKQVSKVVLSLGIVGGTLGGVALCLLIFFIVGRGNAKSKMKNPPTRLISENAASAYTSKLLSDARYISQTKKLGAVGLPTYRSFSLEEIEVATNNFDTASLMGEDSYGQMCRGQLKNGTLVAIRCIKMKKRYSTQNFMPHIELISKLRHRHLASALGHCFECSLDDSSVSKIFLVFEYVPNGTLRSWISDEHARKTLSWTQRIGAAIGVAKGIQFLHTGIVPGVYSNNLKIEDVLLDQNLVAKISSYNLPLLSNIGKVRHGNSSNGLKNSTGNKSAKQEDKSDIYDFGVILLELILGRTIKTTNDADAFKDLLQASIGADDEAKRSIVDPAIRKACLDQSLKTMIEICVRCLAKDSADRPSIEDVLWNLQFAAQVQDAWRGDSQSSEGSPGSPLESRRLPFH. 785
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g03599 784 Pfam Protein tyrosine and serine/threonine kinase 482 748 IPR001245 GO:0004672|GO:0006468
Seca2g03599 784 SUPERFAMILY Protein kinase-like (PK-like) 460 753 IPR011009 -
Seca2g03599 784 MobiDBLite consensus disorder prediction 762 784 - -
Seca2g03599 784 Pfam Leucine rich repeat 154 214 IPR001611 GO:0005515
Seca2g03599 784 FunFam Putative inactive leucine-rich repeat receptor-like protein kinase 30 245 - -
Seca2g03599 784 Gene3D Transferase(Phosphotransferase) domain 1 561 768 - -
Seca2g03599 784 FunFam Putative inactive leucine-rich repeat receptor-like protein kinase 451 560 - -
Seca2g03599 784 FunFam Putative inactive leucine-rich repeat receptor-like protein kinase 561 767 - -
Seca2g03599 784 SUPERFAMILY L domain-like 37 354 - -
Seca2g03599 784 ProSiteProfiles Protein kinase domain profile. 478 753 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca2g03599 784 SMART LRR_typ_2 293 313 IPR003591 -
Seca2g03599 784 SMART LRR_typ_2 153 176 IPR003591 -
Seca2g03599 784 SMART LRR_typ_2 201 224 IPR003591 -
Seca2g03599 784 SMART LRR_typ_2 177 200 IPR003591 -
Seca2g03599 784 Gene3D Phosphorylase Kinase; domain 1 449 560 - -
Seca2g03599 784 ProSiteProfiles Leucine-rich repeat profile. 203 225 IPR001611 GO:0005515
Seca2g03599 784 PANTHER UNNAMED PRODUCT 97 683 - -
Seca2g03599 784 Gene3D Ribonuclease Inhibitor 30 247 IPR032675 -
Seca2g03599 784 FunFam Putative inactive leucine-rich repeat receptor-like protein kinase isoform A 246 363 - -
Seca2g03599 784 Gene3D Ribonuclease Inhibitor 248 363 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g03599 Seca-Chr2 111434451 111440968 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g03599 46 782 Miscellaneous Gene Families AT3G03770 63.306 0.0 889
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VI-1 Seca2g03599 PK_Tyr_Ser-Thr 1.1e-20 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g03599 - - gmx:100807539 1283.47