LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca2g03567	ATGGTTACCATCCATAGTTCCTACACGGTGATCCCCTCTGAGTCTACACCATCATCAACACTCCCTCTTTCCAATTGCGATCAAATCAAGCTCCCCAACCATGGCTGTCAACTTTATCTCTACACACTCACACCCACCACCACCAACGATTCATCTTTCAACTCTTTGATGCACAATTTCAGAACCTCTCTCAGCAAAGCATTGACTCACTACTACCCCTTTGCAGGTCGATTATGCTGGATCCAAGGTGGCCGCTTGGCACTCCTTTGCAACGCTAAAGGGGCACAACTCTTTGAAGCCACCTCTGATTCCCCTTTGGAAGATTTGGATGATTTTGGTGCTACCCATTTCGTCGAACAACTGGTGCCAAAAATTGACTATGATGTCCCTCTTGATGAAGTACCCTTGTTGGTGGTTCAGCTAACCAGGTTCCCCTGTGGTTCACTCACTTTAGGAGCTGCTCTGTGTCGTGCTGTGGTTGATGGAGCCTCTGTTACGAATTTCATGAACTCATGGGCCAAACTAGCCAGAGGAGAGAGTTTAGATTCGAATTTGATGCCACTTCTTGATCGAACTTTGTTAGATTCGAGAAGACTCCATATGGCACCACGTTTTGAACACCCTGAGTTTTCTCCATCACCCCTTTGGGAAGGTAGCTCCAAGATGATGAAATCAAAACCAAAGCTTGCCACGGTTATCTTCAAACTCACCAAAGACCAAGTTGAGAAACTGAAGAAAAAAGCCATCAACAAAAACAAGGTACGAGGTTACACTAGTTTTGAGGTAATAAGTGGTCACTTGTGGAGATGTGTTTGCAAGGTGAGGTATTCAGGGAATTGGAACCAGCCAACAAGGCTAACAACTCTGGTGAATTGTAGAAACAAGTTGAACCCTCCTCTTCCTAATGCTTATTTTGGGAATGCTACGTTTCCTACAGTGACACCAACTTGTTCCTTTGATGATGTTGTGAACAAGCCTTTGAGTTATTCTGTTGGGAAAATAAGGGAAGCTGTTGAGAGAATGAGTGATGAGTATGTAAGATCTGCTCTTGATTATGTAGCAATTCAGAAGGACATGAATTTGTTGAGGGACACTTTTTATAACTCTGCAGGGAAAGAGGGGAAATTCAGGGGAGACCCCAATTTATATGTGGTTGGTTGGGCTAATTTTGCATTTTATGCCACTGATTTTGGGTGGGGAAAACCTGTTTGTTTGGTTCCTGGGGGCATTAATTCTGATGGTAAGGCTTTCATTCTTAATACAGGAAGTGGTGATGGGTTTATTGTGGCCATTTGTTTGCAACCTTCACATGTTGATGCTTTGAAGAAGTTGTTTTATGAGGATATAGAGATTACTACTTCCAAGTTGTGA	1371	0.4333	MVTIHSSYTVIPSESTPSSTLPLSNCDQIKLPNHGCQLYLYTLTPTTTNDSSFNSLMHNFRTSLSKALTHYYPFAGRLCWIQGGRLALLCNAKGAQLFEATSDSPLEDLDDFGATHFVEQLVPKIDYDVPLDEVPLLVVQLTRFPCGSLTLGAALCRAVVDGASVTNFMNSWAKLARGESLDSNLMPLLDRTLLDSRRLHMAPRFEHPEFSPSPLWEGSSKMMKSKPKLATVIFKLTKDQVEKLKKKAINKNKVRGYTSFEVISGHLWRCVCKVRYSGNWNQPTRLTTLVNCRNKLNPPLPNAYFGNATFPTVTPTCSFDDVVNKPLSYSVGKIREAVERMSDEYVRSALDYVAIQKDMNLLRDTFYNSAGKEGKFRGDPNLYVVGWANFAFYATDFGWGKPVCLVPGGINSDGKAFILNTGSGDGFIVAICLQPSHVDALKKLFYEDIEITTSKL.	457

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca2g03567	456	MobiDBLite	consensus disorder prediction	1	21	-	-
	Seca2g03567	456	Pfam	Transferase family	1	446	-	-
	Seca2g03567	456	Gene3D	-	216	447	IPR023213	-
	Seca2g03567	456	Gene3D	-	1	212	IPR023213	-
	Seca2g03567	456	PANTHER	TRICHOTHECENE 3-O-ACETYLTRANSFERASE	10	443	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca2g03567	Seca-Chr2	110594089	110595459	Dispersed/Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Seca2g03567	2	447	Monolignol Biosynthesis Gene Families	AT5G48930	37.054	1.03e-90	280

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca2g03567	K13065		-	gmx:100819383	554.288