Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g03549 ATGGAAATTCAATTCCAGCAACCAAACCTGCAGCATCAGAAAGCAGGAATTTCAGTCAACAAAGGAGGAAAATTCAAAGGTAGAAACAGAAACAGCAAGACAAACAAATTTGTTGGGGTGAGACAAAGGCCTTCAGGGAGATGGGTAGCTGAGATCAAAGACACAACTCAGAAGATAAGAATGTGGCTTGGCACATTTGAGACAGCAGAGGAAGCAGCCAGAGCTTATGATGAAGCTGCATGTCTTCTTCGTGGATCCAACACTCGCACCAACTTCATCACTCATGTCTCAATGGATTCTCCTATTGCTTCTAGGATTCGAAATCTGCTTAACAATAGAAAAGGTATAAAAAAACAGGAAGATGTTGATGCATCTGAAAAACCAAGTGTCACCAACACTAGTAGTGTTTCCACTCCTAGTAATAAAAGTAATGATGATAACAATGACAATTCTCTTTCAAATGGGACAACTCAAAACACAAAGCTGTTTGATGATACTTATAAACCAGATTTGAGTAATTGCAGGGAGGACTTTCTTTCAGCTCCTCAATCCAACATTTCATGGGGTTTTGGTTTTGGACTTGTTTTTGATCGTTTTCCCATTGGTCAGATATTGGATATACCCAAGACAGATGGTTTGACTGATATATCTGGCTTGGAGCTTTCAGAATTTGAAAGAATGAAAGTTGAAAGACAAATATCAGCTTCACTCTATGCAATTAATGGGGTGCAAGAGTACATGGAAACTGTTCAGGACTCCAATGAAGCTCTTTGGGATCTTCCACCTTTGTGTTCATTGTTCTGTTAA 807 0.3928 MEIQFQQPNLQHQKAGISVNKGGKFKGRNRNSKTNKFVGVRQRPSGRWVAEIKDTTQKIRMWLGTFETAEEAARAYDEAACLLRGSNTRTNFITHVSMDSPIASRIRNLLNNRKGIKKQEDVDASEKPSVTNTSSVSTPSNKSNDDNNDNSLSNGTTQNTKLFDDTYKPDLSNCREDFLSAPQSNISWGFGFGLVFDRFPIGQILDIPKTDGLTDISGLELSEFERMKVERQISASLYAINGVQEYMETVQDSNEALWDLPPLCSLFC. 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g03549 268 PRINTS Ethylene responsive element binding protein signature 59 75 IPR001471 GO:0003700|GO:0006355
Seca2g03549 268 PRINTS Ethylene responsive element binding protein signature 37 48 IPR001471 GO:0003700|GO:0006355
Seca2g03549 268 FunFam ethylene-responsive transcription factor RAP2-11 35 94 - -
Seca2g03549 268 MobiDBLite consensus disorder prediction 117 163 - -
Seca2g03549 268 Gene3D AP2/ERF domain 35 94 IPR036955 GO:0003700|GO:0006355
Seca2g03549 268 ProSiteProfiles AP2/ERF domain profile. 36 93 IPR001471 GO:0003700|GO:0006355
Seca2g03549 268 SUPERFAMILY DNA-binding domain 36 93 IPR016177 GO:0003677
Seca2g03549 268 MobiDBLite consensus disorder prediction 1 31 - -
Seca2g03549 268 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 28 234 - -
Seca2g03549 268 SMART rav1_2 36 99 IPR001471 GO:0003700|GO:0006355
Seca2g03549 268 MobiDBLite consensus disorder prediction 126 163 - -
Seca2g03549 268 MobiDBLite consensus disorder prediction 1 16 - -
Seca2g03549 268 Pfam AP2 domain 36 85 IPR001471 GO:0003700|GO:0006355
Seca2g03549 268 CDD AP2 36 92 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g03549 Seca-Chr2 110176392 110177198 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g03549 24 268 AP2-EREBP Transcription Factor Family AT5G19790 43.028 3.46e-51 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Seca2g03549 AP2 5.8e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g03549 K09286 - gmx:100796898 399.438