Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g03528 ATGCCAGAGTTGAGAAGTGGAGCTAGAAGGTCGAAGCGGCTTGGAGATCTTCAGCCTGGTCCACTACCTGTTGATCAAGGAGAAAATTGGGCACAGCCTGCTCCGAACAGAACTAGGAGGAGAGTTGGAGGTGGAAGAGGAAGAGGCGGTAATGCCACAGCTGTAGGTAAAGGGCCTTCACCAGCTGTACCCACAAGGCGAACTGCAGCTGGTAGAGGCCGCGGAGCAAGATTGATTGATCTAGATCCTGAACCCTGTGAGGTCCTTCCAGAACCTGTTGCTTTAGGGGCTCCGGAACCCATTTTCAATCAAGTAGAGGTAGTGGCCAATAATAATAACAATATGGTGGAGGGTGGAAGTGCAGATAAGGTGGCAGGAGCAGGAGCAGGAGCCGAAGAAGAAGCAACCACGACCCCTGTCCCCGAGAGGGTTCAAGTTGGTAGCTCTCCTGTATATAAGATAGAAAGGAAGTTAGGTAAGGGTGGTTTTGGCCAAGTTTATGTCGGCCGAAGGGTAAGTGGTGGTTCTGATCGAACTGGTCCTGACGCCATTGAGGTTGCGCTCAAGTTTGAGCATAGAAACAGTAAAGGTTGCAATTATGGGCCTCCCTATGAGTGGCAAGTCTACAGTACTTTGAATGGTTGCTATGGCATTCCCTGGGTTCATTACAAGGGTCGACAAGGAGATTTCTATATTTTGGTCATGGACATGCTTGGGCCCAGTCTTTGGGATGTGTGGAATTCTCTTGGCCAATCGATGTCGCCAAGTATGGTTGCTTGCATTGCAGTGGAGGCAATATCAATTCTTGAGAAGCTCCATTTGAAAGGGTTTGTGCATGGAGATGTTAAGCCAGAAAACTTTTTGCTTGGTCAACCTGGAACAGCTGATGATAAGAAGTTATATCTTATTGATCTTGGTTTGGCCTCTAGATGGAAGGATGCGTCATCTGGTCAACATGTTGAATATGATCAGAGACCTGATATATTCAGGGGAACGATAAGGTATGCTAGTGTTCATGCACATTTAGGTAGGACTGGAAGTCGAAGGGATGATCTTGAGTCACTGGCATACACCTTAATATTTCTCATAAAAGGGAGATTACCATGGCAGGGTTATCAGGGTGACAATAAAAGTTTTCTTGTTTGTAAGAAAAAAATGTCCACTTCTCCAGAGTTGATGTGCTGCTTTTGTCCTGCACCATTTAAGCAGTTCCTAGAAGCTGTTACTAACATGAGATTTGATGAGGAACCAAATTATTCCAAGCTTATATCACTTTTTGAAAGCTTGATTGAACCATGCACTCCATTGAGACCTATCAGAATTGATGGGGCTTTAAAGGTTGGTCAAAAACGAGGAAGGATGCTTATAAATCTAGAAGAAGATGAGCAGCCTAAGAAGAAAGTGCGATTGGGGAGTCCTGCTACTCAGTGGATATCAGTGTATAATGCACGCCGTCCCATGAAGCAGAGGTATCACTATAATGTAGCGGACACTAGGCTCCGACAGCATGTAGACAAGGGTATTGAGGATGGGTTGTACATAAGTTGTGTGGCCTCTCAAGCAAATTTGTGGGCCCTAATCATGGATGCAGGAACAGGGTTTTCTTCCCAGGTTTATGAGTTATCACCTGCCTTCTTGCACAAGGATTGGATTATGGAGCAATGGGAGAAAAATTACTACATCAGTTCAATAGCTGGTGCAGTTAATGGGAGTTCCTTGGTTGTCATGTCCAAAGGAACTCCTTACACACAGCAGTCCTACAAAGTGAGCGAATCATTTCCTTTCAAATGGATAAATAAGAAGTGGAAGGAAGGCTTCCATGTTACCTCCATGACTACTGCTGGAAATCGCTGGGGTGTTGTTATGTCCAGGAATGCTGGGTATTCTGATCAGGTTGTGGAGCTTGACTTTTTGTATCCAAGTGAAGGAATCCATCGACTATGGGAGAGTGGTTACCGGATTACGTCAATGGCTGCTACTACTGATCAGGCAGCCTTCATACTAAGCATACCAAAACGCAAATTGCTTGATGAAACTCAAGAGACTCTGCGTACATCTGCTTTTCCCAGTACCCATGTAAAGGAAAAATGGGCCAAGAATCTCTATATTGCCTCAATATGTTATGGGCGAACTGTTTGCTAG 2142 0.4514 MPELRSGARRSKRLGDLQPGPLPVDQGENWAQPAPNRTRRRVGGGRGRGGNATAVGKGPSPAVPTRRTAAGRGRGARLIDLDPEPCEVLPEPVALGAPEPIFNQVEVVANNNNNMVEGGSADKVAGAGAGAEEEATTTPVPERVQVGSSPVYKIERKLGKGGFGQVYVGRRVSGGSDRTGPDAIEVALKFEHRNSKGCNYGPPYEWQVYSTLNGCYGIPWVHYKGRQGDFYILVMDMLGPSLWDVWNSLGQSMSPSMVACIAVEAISILEKLHLKGFVHGDVKPENFLLGQPGTADDKKLYLIDLGLASRWKDASSGQHVEYDQRPDIFRGTIRYASVHAHLGRTGSRRDDLESLAYTLIFLIKGRLPWQGYQGDNKSFLVCKKKMSTSPELMCCFCPAPFKQFLEAVTNMRFDEEPNYSKLISLFESLIEPCTPLRPIRIDGALKVGQKRGRMLINLEEDEQPKKKVRLGSPATQWISVYNARRPMKQRYHYNVADTRLRQHVDKGIEDGLYISCVASQANLWALIMDAGTGFSSQVYELSPAFLHKDWIMEQWEKNYYISSIAGAVNGSSLVVMSKGTPYTQQSYKVSESFPFKWINKKWKEGFHVTSMTTAGNRWGVVMSRNAGYSDQVVELDFLYPSEGIHRLWESGYRITSMAATTDQAAFILSIPKRKLLDETQETLRTSAFPSTHVKEKWAKNLYIASICYGRTVC. 714
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g03528 713 PANTHER CASEIN KINASE-RELATED 152 675 - -
Seca2g03528 713 CDD STKc_CK1 152 426 - -
Seca2g03528 713 ProSitePatterns Protein kinases ATP-binding region signature. 158 189 IPR017441 GO:0005524
Seca2g03528 713 FunFam Casein kinase 1-like protein 120 472 - -
Seca2g03528 713 SMART serkin_6 152 434 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca2g03528 713 SUPERFAMILY Protein kinase-like (PK-like) 152 440 IPR011009 -
Seca2g03528 713 ProSiteProfiles Protein kinase domain profile. 152 430 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca2g03528 713 ProSitePatterns Serine/Threonine protein kinases active-site signature. 277 289 IPR008271 GO:0004672|GO:0006468
Seca2g03528 713 Pfam Protein kinase domain 152 387 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca2g03528 713 Gene3D Transferase(Phosphotransferase) domain 1 117 469 - -
Seca2g03528 713 MobiDBLite consensus disorder prediction 1 72 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g03528 Seca-Chr2 109467258 109475111 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g03528 269 426 MAP Kinase Kinase Kinase AT5G50180 24.375 2.44e-07 51.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1-Pl Seca2g03528 Pkinase 1.1e-15 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g03528 - - gmx:100801967 1337.78
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca2g03528 2 109467258 109475111 Seca2g03528 2 109467258 109475111 ECH