Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g03523 ATGGCAATTGCACGCACTGGAGTCTACGTCGACGACTATTTGGAGTATGCCAGCACATTGCCCGCTGAGCTTCAGAGGCTGCTCAATACTGTCCGAGAACTCGATGAACGATCCCAATGTAAACAATGCTTTATCAAAATTTCCCTTTTTTCCTCTTTATTTTTTTCCCTGTTTGTGATGGAAGCTATGATAAACCAGACCAGGCAGCAAACAAAGTATAGTATGGGGTTCTCATCACATGGCTCTAAGAAAGGTAACAGTTACACTAATGAGGATGATGATGCTGCTATTGAGAAAATGCGAAAAGAAATCGAGGCAAATCAAGACAGTGCATTGAGTCTATGTACTGAGAAAGTTTTGTTGGCACGGCAAGCATATGATTTGATAGATAGCCATGTAAAACGACTTGATGAGGATTTAAACAACTTTGCTGAAGATTTAAAGCAAGAGGGGAAAATACCACCAGATGAACCAGCAATTCTTCCCCCATTGCCTATAGTCCCTAAAACTGAAAAGCGCAGCAGGCCCTTATATGGAACACCTCAATCAAAGAGACTTGATTACAGGGATAGAGACTGGGATCGGGAACGTGATAGGGACTTTGAGCTAATGCCTCCACCAGGAAGCTATAAGAAGGAGTATGCAACCCCTATGGATGTTGATCAACCCATTGATCCAAATGAACCTACATACTGTGTTTGTCATCAGGTGTCTTTTGGAGACATGATTGCTTGTGATAATGAAAATTGCCAAGGAGGTGAATGGTTCCACTATGCATGCGTTGGCCTGACACAAGAGACAAGGTTCAAGGGAAAGTGGTATTGTCCGACTTGCAGATTACTACCACAATGTCAATGA 858 0.4254 MAIARTGVYVDDYLEYASTLPAELQRLLNTVRELDERSQCKQCFIKISLFSSLFFSLFVMEAMINQTRQQTKYSMGFSSHGSKKGNSYTNEDDDAAIEKMRKEIEANQDSALSLCTEKVLLARQAYDLIDSHVKRLDEDLNNFAEDLKQEGKIPPDEPAILPPLPIVPKTEKRSRPLYGTPQSKRLDYRDRDWDRERDRDFELMPPPGSYKKEYATPMDVDQPIDPNEPTYCVCHQVSFGDMIACDNENCQGGEWFHYACVGLTQETRFKGKWYCPTCRLLPQCQ. 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g03523 285 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 223 280 IPR013083 -
Seca2g03523 285 SMART PHD_3 231 279 IPR001965 -
Seca2g03523 285 ProSiteProfiles Zinc finger PHD-type profile. 229 281 IPR019787 -
Seca2g03523 285 SMART ING_2 9 143 IPR024610 -
Seca2g03523 285 Pfam Inhibitor of growth proteins N-terminal histone-binding 9 143 IPR024610 -
Seca2g03523 285 CDD PHD_ING 231 278 - -
Seca2g03523 285 Gene3D - 5 141 - -
Seca2g03523 285 FunFam PHD finger protein ING 223 281 - -
Seca2g03523 285 MobiDBLite consensus disorder prediction 149 184 - -
Seca2g03523 285 SUPERFAMILY FYVE/PHD zinc finger 206 280 IPR011011 -
Seca2g03523 285 PANTHER INHIBITOR OF GROWTH PROTEIN 2 279 IPR028651 -
Seca2g03523 285 CDD ING_plant 17 140 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g03523 Seca-Chr2 109394897 109400760 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Seca2g03523 ING 1.3e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g03523 - - gmx:100787916 476.863
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca2g03523 2 109394897 109400760 Seca2g03523 2 109394897 109400760 ECH