Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g03515 ATGTTGATTTCTTATGTAGAAAATGAAAAAGATAAGTCACAAACAATTATAATTGTTGTCCCGATCGTTGTTTTGGCGGCACTCTTTTCTTTTTGTTGTTTGTTATGGAAGATAAAAAGAAAGAGAAGTTACAAAGCTATTCTCAGAAAAAACTTCAAACATGTTGATCTAGTTGGTGATGAAAGTACCACTTTAGAAGGGTTGCAATTTGATGTAACTATAATCAAAGAAGCGACAAACAATTTTTCACATGAAAACAAGATTGGAAAAGGTGGATTTGGAGAAGTTTACAAGGGTACTCTTCCTGATGGACGGCATATAGCTGTTAAGAGGCTTTCAACAAGTTCCAAGCAAGGTTTAGTTGAGTTCAAGAATGAGATTTTATTGATAGCCAAATTGCAGCAGAGAAATCTTGTGTCATTGATAGGATTTTGCCTAGAAGAGCATGAGAAGATTCTTATTTATGAATACGTGCCAAACAAAAGTCTTGATTACTTTTTATTTGCAGATACTCAACAACATAAGTTAAGCTGGTGTGAGCGTTACATAATTATAAAAGGGACAGCTCTAGGAATTCTTTATTTGCATGAATATTCTCGTCTTAAAGTTATACATCGTGATCTCAAGCCTAGTAATATTCTATTAGATGAAAATATGAACCCAAAAATATCAGACTTTGGCATGGCTAGAATTGTTGATATAGATCAAGATCGTGGAAATACAAATAGAATTGTTGGAACATATGGTTACATGTCTCCAGAATATGCAATGTTAGGACAATTTTCTGAGAAGTCGGATGTTTTTAGTTTTGGTGTCATGGTTTTAGAGATTATTACTGGAAGAAGGAACACAAATTCTTATGAATCACACCATTTTGCTGAAAGCATCATAAGTTATGTCTGGAGACAATGGAAGAAGGAAACACCATTAAGCACATTGGACCCAAATTTGAAAGAAAAATATTCTCAGAATGAAGTTATTAAGTGCATTCATATTGGTCTATTATGCGTTCAAGAGAACCCAATTGCTAGACCAAAAATGGCAACAATTATTTCATATCTTAATAGTCATTCGCTTGAATTGCCATCTCCACAAGAACCAGCATTTTTCTTACATAGTAGAAGGGATCAAGAAATAACAACACAACAAGAATCCAATTCTGGTGAATCTGTCCACAATTTCACATCATTGTCTATCAATGAGATGTCTATAAGTGAGATTTATCCTCGACAATAA 1236 0.3358 MLISYVENEKDKSQTIIIVVPIVVLAALFSFCCLLWKIKRKRSYKAILRKNFKHVDLVGDESTTLEGLQFDVTIIKEATNNFSHENKIGKGGFGEVYKGTLPDGRHIAVKRLSTSSKQGLVEFKNEILLIAKLQQRNLVSLIGFCLEEHEKILIYEYVPNKSLDYFLFADTQQHKLSWCERYIIIKGTALGILYLHEYSRLKVIHRDLKPSNILLDENMNPKISDFGMARIVDIDQDRGNTNRIVGTYGYMSPEYAMLGQFSEKSDVFSFGVMVLEIITGRRNTNSYESHHFAESIISYVWRQWKKETPLSTLDPNLKEKYSQNEVIKCIHIGLLCVQENPIARPKMATIISYLNSHSLELPSPQEPAFFLHSRRDQEITTQQESNSGESVHNFTSLSINEMSISEIYPRQ. 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g03515 411 ProSitePatterns Protein kinases ATP-binding region signature. 88 110 IPR017441 GO:0005524
Seca2g03515 411 SUPERFAMILY Protein kinase-like (PK-like) 66 382 IPR011009 -
Seca2g03515 411 ProSiteProfiles Protein kinase domain profile. 82 360 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca2g03515 411 Gene3D Phosphorylase Kinase; domain 1 41 157 - -
Seca2g03515 411 ProSitePatterns Serine/Threonine protein kinases active-site signature. 203 215 IPR008271 GO:0004672|GO:0006468
Seca2g03515 411 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 23 42 157 - -
Seca2g03515 411 SMART serkin_6 82 354 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca2g03515 411 FunFam cysteine-rich receptor-like protein kinase 10 158 361 - -
Seca2g03515 411 Gene3D Transferase(Phosphotransferase) domain 1 158 364 - -
Seca2g03515 411 Pfam Protein kinase domain 83 350 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca2g03515 411 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 10 407 - -
Seca2g03515 411 CDD STKc_IRAK 88 355 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g03515 Seca-Chr2 109233082 109234798 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g03515 60 410 Receptor kinase-like Gene Family AT4G23150 54.701 1.24e-138 409
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Seca2g03515 Pkinase 3.9e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g03515 - - mtr:25485260 575.089