Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g03507 ATGAACATGGATATGTGCCAAAATGTATCAGTTTCCGGCCACCAAGAGCACTCAAAGCTTCCTACCTTCTCAACCAGCCTTGATGACCTCTTCTCTGCTCAGAACACTGAAGTGGATGATGGCTTGGAATGGCTTTCAGTATATGTTGAAGACTGCTTTTCCAGCCCTCCAAGTTGTGTGTTTGTACCTTCTGGTGTTCAGACCACAAGCACAAGCTCCAAACCTTCAGGCACACTTCAGAGACCAAGGGAAAATGAGTCTCCTTTTGCAGTTCCTGGGAAGGCAAGGAGCAAAAGGAAAAGACTTTCAGCTCCTAGAACCAAAGACCCTTTAAGCATCTGGTCAAACCATTTGAACCCTCAAAATGATGCCTTTAGTTCTGACCCTCCTCTCCTAAAACAGGCTTATTGGTTAGCTGATAGTGAACTCATTGTCCCTAAACAGAAGGATGAGCAAGAGGGAGCCAAAGATGAAGAAGTGGTGAAGAAAGGGATTGTTATGAGCAAGGAAAGCTTTGGGGACTCTGAGACTGAGGTTAGCAATGGTGGACAGCATCCAATGCCAAGGAGGTGCACCCATTGCTTGGCACAGAGGACCCCACAATGGAGGGCAGGACCATTGGGTCCAAAGACACTATGCAATGCATGTGGAGTGAGGTACAAGTCTGGTAGGTTGCTACCAGAGTATAGACCAGCCAAGAGTCCTACTTTTGTTAGCTACTTGCATTCAAATTCCCACAAGAAAGTCATGGAGATGAGGATGTCTCTCCTATCTTCTATTCCTAATGAGCAGTAG 795 0.4629 MNMDMCQNVSVSGHQEHSKLPTFSTSLDDLFSAQNTEVDDGLEWLSVYVEDCFSSPPSCVFVPSGVQTTSTSSKPSGTLQRPRENESPFAVPGKARSKRKRLSAPRTKDPLSIWSNHLNPQNDAFSSDPPLLKQAYWLADSELIVPKQKDEQEGAKDEEVVKKGIVMSKESFGDSETEVSNGGQHPMPRRCTHCLAQRTPQWRAGPLGPKTLCNACGVRYKSGRLLPEYRPAKSPTFVSYLHSNSHKKVMEMRMSLLSSIPNEQ. 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g03507 264 Gene3D - 181 252 IPR013088 GO:0006355|GO:0008270
Seca2g03507 264 ProSiteProfiles GATA-type zinc finger domain profile. 185 221 IPR000679 GO:0006355|GO:0043565
Seca2g03507 264 SMART GATA_3 185 239 IPR000679 GO:0006355|GO:0043565
Seca2g03507 264 FunFam GATA transcription factor 181 262 - -
Seca2g03507 264 CDD ZnF_GATA 190 237 IPR000679 GO:0006355|GO:0043565
Seca2g03507 264 PANTHER GATA TRANSCRIPTION FACTOR 22 257 - -
Seca2g03507 264 Pfam GATA zinc finger 191 225 IPR000679 GO:0006355|GO:0043565
Seca2g03507 264 MobiDBLite consensus disorder prediction 65 83 - -
Seca2g03507 264 MobiDBLite consensus disorder prediction 65 115 - -
Seca2g03507 264 ProSitePatterns GATA-type zinc finger domain. 191 216 IPR000679 GO:0006355|GO:0043565
Seca2g03507 264 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 186 249 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g03507 Seca-Chr2 108845875 108847014 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g03507 18 253 C2C2-Gata Transcription Factor Family AT4G32890 39.837 1.40e-43 148
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Seca2g03507 GATA 1.1e-14 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g03507 - - gmx:100786479 397.512
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca10g02149 10 24593505 24594561 Seca2g03507 2 108845875 108847014 PCT