Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g03490 ATGGAAGAGCCTATTGTAGTGAACAAAGGTGAAGAGCCTCTGGATTTGCCTCCAGGTTTTAGGTTCCACCCTACAGATGAAGAGATAATAAGTTATTATCTCACTGAGAAGGTAAAGAATAGCAGTTTCAGTGCAACTGCTGTTGGAGAGGCTGATTTGAACAAGTGTGAACCTTGGGATTTGCCAAAAAAAGCTAAGATGGGTGAGAAAGAGTGGTACTTCTTCTGTCAAAAGGATAGGAAGTATCCAACAGGGATGAGGACTAATAGAGCTACAGAATCTGGATATTGGAAGGCAACAGGAAAAGATAAGGAGATTTACAAAGGAAAAGGGAACCTTGTTGGGATGAAGAAGACTCTTGTGTTCTATAGAGGAAGAGCTCCAAAGGGAGAGAAGACTAATTGGGTCATGCATGAATTCAGATTGGAAGGCAAATTTGCAACTTACAGCCTTCCTAAGGCAGCTAAGGTAGAAAAGCAAACCCCTTTCCATTTTGATGAATGGGTTGTGTGCAGGGTTTTTCACAAGAACACAGATGTTAAAAAGACTCAAATTCCTGGCCTTTTGAGGATGAACTCAATTGGGGATGATCTTATGGATTATGCTTCACTTCCACCTCTCATGGATCCTTCTTATGGCATCAACCCCAACACCAAAGCTACAAGCTTTAGTGATGATGGCTTCAAAGGAACCAACCCATTATCATCAACTAAATCACAATCAGATGGCTATTATCTCCCCACTTTTTCCATCAACAATCATCACCAGCTTTTGATCAAACCAGAAGACCACAGAACCACCTATGAGATTCCCACCACAAACTACACTTCCAACCAAGCCAATTTCACCAACCCAATGATGAACAACATGAACACAAACACACTCTCACAACAGCCTCAGAGTCACTCCCCTTTTCAGAAAAACATCTTCTCTGACTACTATCTGCACCAAAACAGAATCAAAAGTTCCATGCCAAGTGTTACAGGTTTTGGAAACATTAACAACACACATGATGATGCTATCCTAAGAGCATTTGCAGCCAAGAATAATAGCAACAATGAGTACATTTCTGGATTGGACAAACAGTGCAAGATGGAGCAATTTTCTTCTAACCATTCCCAAGACACTGGACTAAGCAATGACAGAAACACTGATACATCTTCAGTGGTTTCAAAGCAACAAGACATTGGAAGATCAAGTAGAACATTGTATGAAGATCTTGAAGGTCCATCATCAGTTGCACCTCTCTCAGATTTGGAATGCTTATGGGACCTCTGA 1278 0.41 MEEPIVVNKGEEPLDLPPGFRFHPTDEEIISYYLTEKVKNSSFSATAVGEADLNKCEPWDLPKKAKMGEKEWYFFCQKDRKYPTGMRTNRATESGYWKATGKDKEIYKGKGNLVGMKKTLVFYRGRAPKGEKTNWVMHEFRLEGKFATYSLPKAAKVEKQTPFHFDEWVVCRVFHKNTDVKKTQIPGLLRMNSIGDDLMDYASLPPLMDPSYGINPNTKATSFSDDGFKGTNPLSSTKSQSDGYYLPTFSINNHHQLLIKPEDHRTTYEIPTTNYTSNQANFTNPMMNNMNTNTLSQQPQSHSPFQKNIFSDYYLHQNRIKSSMPSVTGFGNINNTHDDAILRAFAAKNNSNNEYISGLDKQCKMEQFSSNHSQDTGLSNDRNTDTSSVVSKQQDIGRSSRTLYEDLEGPSSVAPLSDLECLWDL. 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g03490 425 Pfam No apical meristem (NAM) protein 17 142 IPR003441 GO:0003677|GO:0006355
Seca2g03490 425 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 15 303 - -
Seca2g03490 425 FunFam NAC domain-containing protein 100-like 25 180 - -
Seca2g03490 425 Gene3D NAC domain 25 181 IPR036093 GO:0003677|GO:0006355
Seca2g03490 425 MobiDBLite consensus disorder prediction 367 400 - -
Seca2g03490 425 MobiDBLite consensus disorder prediction 367 412 - -
Seca2g03490 425 ProSiteProfiles NAC domain profile. 16 176 IPR003441 GO:0003677|GO:0006355
Seca2g03490 425 SUPERFAMILY NAC domain 13 177 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g03490 Seca-Chr2 108398996 108401346 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g03490 1 212 NAC Transcription Factor Family AT5G18270 71.041 5.00e-110 325
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Seca2g03490 NAM 1.1e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g03490 - - aprc:113861501 666.766