Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g03486 ATGCTTTGCTCCAAGTTTCAGTCTTTATCCTCACCAAACCCTCAACATTTAGCTAGTAACCACCACATGGCTACCCCAGAGTCCAATTTGCCACCAGGTTTTAGGTTCCACCCAACTGATGAGGAGCTCATTCTTCATTACCTCAGAAAAAAAATTGCCTCCATACCCTTACCAGTTTCCATCATTGCTGAGGTTGATATCTACAAGCTTGATCCATGGGAATTACCAGCAAAGGCTACATTTGGGGAGAAAGAATGGTATTTTTTCAGTCCTAGAGACAGGAAGTACCCAAATGGTGCAAGGCCAAACAGAGCAGCTGCTTCAGGGTATTGGAAGGCCACTGGCACAGATAAGACCATAGTGACATCATTACCAAGAGGAGGGGCCAAAGAGCACATTGGTGTGAAGAAGGCTTTGGTATTTTACAAAGGAAAACCTCCAAAAGGTGTCAAGACCAATTGGATCATGCATGAATATCGCCTCGTAGACAACAACAAACCCATTAAGCTCAAAGATTCCTCCATGAGGTTGGATGATTGGGTACTGTGCCGGATTTACAAGAAGTCCAAATACACTCTACCTTCAACAGAGGCAGCTACAGGGGTAGGTGAGGTAGAAGAACACCAATTCAAAGATACCCTTTGGCCAATCTCAAAATCTCCAACACCTCCTCCTCAGAACACACTGATATCTCAGAAATCTGTGTCCTTTTCCAACCTATTGGATGCCATGGACTATTCCATGCTGAGTAGCTTCTTATCTGAGAACCATTCCAACACACCAGGGATTGGAATTGGATCAAGTGCAGGATTCAACAGTGGGATCAATTTGGATCAGCAACCTTCTCAAATTAACACCAGCAATTTTCACATTTTTCAGAAGAATCCCCAATTGAACCCTTCAGTCACCAACATGGAAAACATTAGGCCAAAGCGCCAGCTTTCAAACATGGATCATGAGGACACTTTGTACCCATCAAAGAAATACATGAGTTCTTCTTGCAACTTCCCAACTAACATCAATGCCCAATTTGAGAACCCACAATGGAACTACCTCATGAAGCAGTCTTTGTTGACTCAGCAGTTACTCCTGGGTCCTCATCTTCAATTTCAAGGATAA 1119 0.4343 MLCSKFQSLSSPNPQHLASNHHMATPESNLPPGFRFHPTDEELILHYLRKKIASIPLPVSIIAEVDIYKLDPWELPAKATFGEKEWYFFSPRDRKYPNGARPNRAAASGYWKATGTDKTIVTSLPRGGAKEHIGVKKALVFYKGKPPKGVKTNWIMHEYRLVDNNKPIKLKDSSMRLDDWVLCRIYKKSKYTLPSTEAATGVGEVEEHQFKDTLWPISKSPTPPPQNTLISQKSVSFSNLLDAMDYSMLSSFLSENHSNTPGIGIGSSAGFNSGINLDQQPSQINTSNFHIFQKNPQLNPSVTNMENIRPKRQLSNMDHEDTLYPSKKYMSSSCNFPTNINAQFENPQWNYLMKQSLLTQQLLLGPHLQFQG. 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g03486 372 MobiDBLite consensus disorder prediction 1 26 - -
Seca2g03486 372 ProSiteProfiles NAC domain profile. 30 188 IPR003441 GO:0003677|GO:0006355
Seca2g03486 372 SUPERFAMILY NAC domain 18 188 IPR036093 GO:0003677|GO:0006355
Seca2g03486 372 Gene3D NAC domain 39 192 IPR036093 GO:0003677|GO:0006355
Seca2g03486 372 FunFam NAC transcription factor 56 39 193 - -
Seca2g03486 372 PANTHER NAC TRANSCRIPTION FACTOR 56 30 209 - -
Seca2g03486 372 MobiDBLite consensus disorder prediction 1 30 - -
Seca2g03486 372 Pfam No apical meristem (NAM) protein 31 161 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g03486 Seca-Chr2 108310675 108312039 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g03486 26 372 NAC Transcription Factor Family AT3G04070 52.676 1.56e-108 320
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Seca2g03486 NAM 2.7e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g03486 - - gmx:100301906 602.438