Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g03478 ATGAATGAGACATCGATTCCAATAGCCCAAGGTGTAGATAAATGGGTAAAAAATATTCATGAAAATATCGGGCAACATGACCAGGAGAGTGTTGTTGACTATACACCATACTTGGAAATGGAGTTTGAATCTGAGGTTGCGGCCTATGAGTTTTATAATGAGTACAGTAGAAGAATTGGGTTTGGTATTCGTCGAGAATATGGAAATAAAAGCAAAAAAGATGGAATTCTAACTTCAAGAAGGTTCGCATGCTTCAAAGAGGGTAAACGGGGCGTTGACAAACGAGACCATTTGACAAAAGAGCCTAGAGCAGAAACTAGAACAGGATGTAAATCACGTATGGTTATTTCACTTGATCGAAAGATTGGGAAATACAAGGTTATTGACTTTGTAGCTCAACATAATCATCCTCTTCAACCGCCAAAATATGTTCATATGATTCCCTCCCATCGACACATATCTGAGTCACAAGCATCACAAATTGTATTGGCAGATGAATCTGGATTGAAACCAAAAGATTTTCATGAATATGTGTCCAAGCAAGTTGGTGGAATAGAAGGTGTTGGTTATACAAGACAAGATCATAAGAATTACCTCCGAACTAGAAGAAAACAGTCTTTAAGGTATGGTGAAGTGGGTGCATTATTGATGTACTTCAAACAACAAAGTGAAAATCCTTCATTCTTTTATGACTTTCAAATGGATGTAGAAGAGCAAATAACAAATATATTTTGGGCAGATGCACAAATGATAAATGATTATGGGTACTTTGGCGATATCATCACTTTTGATACCACTTACAAGACAAATAAGGATTATCGACCTCTGGGAGTATTTCTTGGGCTTAATAATCATAGGCAAACAATTGTTTTTGGGGCAACATTGCTATATGATGAAACAATTCCTTCTTTTCAGTGGTTATTTGAAACTTTTCTGAGAGCAATGGGTGGAGAAAAGCCTAAAACCATTCTAACAAATCAAGATGCAGCAATGGCTAAGGCTATTTCTTTAGTTATGCCAGAAACATTTCATGGATTATATTTTGAAGCATGCATTGATCTACATGAGGAAGAAGGTGAATTTTTGAATGCATGGAGTGCTTTACTTGTTGACCATAGTGTTTCTGATGATTCATGGCTACACACAATTTTTCGAGTGAAGGAAAAATGGGCATGGGCTTATGTTCGAAAAACTTTCACTGCAGGTATGAGATCTACTCAATTAAGTGAGAGCTTTAATGTTGATTTGAAAAATCATTTGAAGTCAGATTTAAATTTGGTACAATTTTTTACACACATGGAAAGAGTTGTCAATGGAAAAAGGTACAATAAGTTAGAAGCTGATTATGAGTCAAGACATAAGCTGCCTAGATTGAAAATGAAGAAGGCCCCTATGCTTGTACAAGCTGGAAACATTTACACTCCAAAAATATTTGAGGAATTCCAAGAGGAATATGAGGAATATCAAGGCACTTGCATAAAGGAAATGAAAGAAGGGTTGTACATTGTTACAAATTATGATAACAATAAGGAGCGAATAGTATTGGGGAATGTTGTGGATCAAAAGGTTGCTTGTGATTGTCGTAAATTTGAGACTCATGGTATCTTATGCAGTCATGCTTTGAAAGTTTTGGATGTGATGAATATTAAGTTAATTCCCCAACATTATATACTAAAGAGATGGACAAGAGATGCAAAGTCAGGAAGAAATCGAGATTGGAAAGGAAAACATGTTGAATTGGATATAAAAGCCCATTTCATGAAGAGATGCAATGAGTTATGTCCTCGAATGATTAAATTGACAGATAGAGTATGTGAATCTCATGAAACTTACACATTTTTGTCCAAAGTTTGTGAAGAGTCTAATAAAATAATTGAAGTTATGTTAGCTAAAAAGTCTATGGATGGAGAAACAATGGGAAGGTGTGATGTATCCATATCAATTGCAAGTGGAAATATTGACAACAATGTGATCAACATGGATTTTGGTGAAGCAAAAGGCATAAAGAAGCGAGATTGCTCATATAAGGCTAAAAAACGACCTAAATCTTGGGTCGAGAAATTGACTAGAAAGAGAAAAGCTAACTTAACACAAAAGAAGAAAAAGCCTCAAGAGAATGTGGATCAATCTGTAGCAACAAGTGATGGTGTACATACTTTTAATACAAGTCATACTTTTACTGAGTTGTTAACGCAACCACTGGACTACAATTCAATTTCTCAATCATTAGATCATATAAGTCAAAATGGAAGCCAGTGTGGGGGTATTCCACCTTGTTTGGGGGGTATGTATAGGACAGCAGCAGGTAGCAGGACAGCAGGTTTGACAATGGACAAGTTGCAATCTGACATTGCTTTTAGAAATCAAGCCTACAGTGACAATGGACAGCAGCTTGACATCCCTTTTAGATAA 2412 0.3599 MNETSIPIAQGVDKWVKNIHENIGQHDQESVVDYTPYLEMEFESEVAAYEFYNEYSRRIGFGIRREYGNKSKKDGILTSRRFACFKEGKRGVDKRDHLTKEPRAETRTGCKSRMVISLDRKIGKYKVIDFVAQHNHPLQPPKYVHMIPSHRHISESQASQIVLADESGLKPKDFHEYVSKQVGGIEGVGYTRQDHKNYLRTRRKQSLRYGEVGALLMYFKQQSENPSFFYDFQMDVEEQITNIFWADAQMINDYGYFGDIITFDTTYKTNKDYRPLGVFLGLNNHRQTIVFGATLLYDETIPSFQWLFETFLRAMGGEKPKTILTNQDAAMAKAISLVMPETFHGLYFEACIDLHEEEGEFLNAWSALLVDHSVSDDSWLHTIFRVKEKWAWAYVRKTFTAGMRSTQLSESFNVDLKNHLKSDLNLVQFFTHMERVVNGKRYNKLEADYESRHKLPRLKMKKAPMLVQAGNIYTPKIFEEFQEEYEEYQGTCIKEMKEGLYIVTNYDNNKERIVLGNVVDQKVACDCRKFETHGILCSHALKVLDVMNIKLIPQHYILKRWTRDAKSGRNRDWKGKHVELDIKAHFMKRCNELCPRMIKLTDRVCESHETYTFLSKVCEESNKIIEVMLAKKSMDGETMGRCDVSISIASGNIDNNVINMDFGEAKGIKKRDCSYKAKKRPKSWVEKLTRKRKANLTQKKKKPQENVDQSVATSDGVHTFNTSHTFTELLTQPLDYNSISQSLDHISQNGSQCGGIPPCLGGMYRTAAGSRTAGLTMDKLQSDIAFRNQAYSDNGQQLDIPFR. 804
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g03478 803 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 22 623 IPR031052 GO:0006355
Seca2g03478 803 Pfam FAR1 DNA-binding domain 50 140 IPR004330 -
Seca2g03478 803 ProSiteProfiles WRKY domain profile. 65 139 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca2g03478 803 MobiDBLite consensus disorder prediction 692 712 - -
Seca2g03478 803 ProSiteProfiles Zinc finger SWIM-type profile. 501 548 IPR007527 GO:0008270
Seca2g03478 803 SMART 26again6 523 550 IPR006564 GO:0008270
Seca2g03478 803 Pfam SWIM zinc finger 518 545 IPR007527 GO:0008270
Seca2g03478 803 Pfam MULE transposase domain 260 345 IPR018289 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g03478 Seca-Chr2 107525413 107528836 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Seca2g03478 FAR1 1.7e-23 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g03478 - - tpra:123895462 1078.16