Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g03430 ATGAGTTTTCAAGATATCCAAAACCCTCCCACTCGCCGAAACCAGTCACCGTCGCAGGCCGTCGCTGCCGGAATTTTCCAGATCAACACCTCCGTCGCTACTTTCCGGCGACTCGTCGATGCCATTGGAACCGTTAAAGACACTCAGGAGCATCGTCAGAAACTGCATAATACGAGGCAGAGGATATTGCAGCAGGTGAAGGATACTTCTGCTAAGCTCAAATCATTGTCTGAATCTGATCGTGATGCTAATGCCAATGCTAATAAGAATATTGAAGATGCTAAGCTAGCAAGAGATTTTCAAACCACATTGCAAGAATTCCAGAAAGTACAACAGCTTGCTTCTGAGCGCGAATCAACTTACACTCCTGCTGCTCCTTCTACTTCTTTACCAACAAGCTCTGGCTCTGGTGAAGAATCGGTTGATATAGACCGGGAAAGCCAACCTTTTATCAAAGAGCAGAAGAGGCAAGAGATACTTCTATTGGACAATGAAATATCCTTCAATGAGGCCATGATTGATGAAAGAGAACAGGCTATTAGAGAGGTACAAGACCAAATTGGACAAGCAAATGAAATATTCAAGGATCTAGCTGTTCTGGTTCATAATCAGGGAGTTGTTATTGGTAAATAA 633 0.4344 MSFQDIQNPPTRRNQSPSQAVAAGIFQINTSVATFRRLVDAIGTVKDTQEHRQKLHNTRQRILQQVKDTSAKLKSLSESDRDANANANKNIEDAKLARDFQTTLQEFQKVQQLASERESTYTPAAPSTSLPTSSGSGEESVDIDRESQPFIKEQKRQEILLLDNEISFNEAMIDEREQAIREVQDQIGQANEIFKDLAVLVHNQGVVIGK. 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g03430 210 Gene3D - 171 210 - -
Seca2g03430 210 Pfam Syntaxin-like protein 22 121 IPR006011 GO:0016020
Seca2g03430 210 SUPERFAMILY t-snare proteins 15 205 IPR010989 GO:0016020|GO:0016192
Seca2g03430 210 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 170 210 IPR000727 -
Seca2g03430 210 PANTHER SYNTAXIN 16 208 IPR045242 -
Seca2g03430 210 SMART SynN_4 5 119 IPR006011 GO:0016020
Seca2g03430 210 MobiDBLite consensus disorder prediction 112 138 - -
Seca2g03430 210 FunFam Syntaxin-22 like 12 125 - -
Seca2g03430 210 MobiDBLite consensus disorder prediction 112 143 - -
Seca2g03430 210 Coils Coil 173 193 - -
Seca2g03430 210 Gene3D - 9 127 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g03430 Seca-Chr2 105778096 105781159 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g03430 1 208 SNARE and Associated Proteins AT5G46860 58.605 1.36e-80 239
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g03430 - - gmx:100787141 335.88
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca2g03430 2 105778096 105781159 Seca2g03430 2 105778096 105781159 ECH