Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g03427 ATGAGTTTTCTAAACTCTCTTGCTGGTAACTTTTGGGATGATCCATGGGGGAACCCATGGTACTCCTCTACTGCTCTCTACTATCCCACTGTGGCTCCTACTCCTCCATCTTATTTTGCTAAGATGGTATCAAAACTCCATCCATGGAGCTCACCTCGCTTCAAGAAGAAGAAGAAACAGTGTTGTGCGAAGAAGCTATCGATGATTGCTGAGAGTCTTGAAGAGGTGTTTTCTTCTTCTGCTGCAACGACCACTCCTTCATTCTCATCTGCATCTGCAGCTGCTCCATCCTCTACCTTCGGTTCTCTGGATCTTCACCGCGAAGAGGAGGACGCTCCCACTGGCGAGGACGAGAACACTGAAGTTCAGGTCACTCCGATCATCAAACTTGAAGAGGTCGCTCTCTCCACTGGCGAAGAGGATGATGAACCTATTATTAACCTCAGAACAAAGTTGTATCGTTTCGACAAGGACGGAAATCAATGGAAGGAGCGAGGAGTTGGCACCGTGAAGATCCTGAACGCCAAAGCAGTTCTGGACACTGTTTCAGATTTAAACAAGAGTAGCGTTCCGGAAAATGTTTGTGGGCTTGATCGCTGCATTTGGATTTCATCAGAATTGAAAGAGTTGAATGATGATTGTAAGTATTTTGAATCTTACTCTCTTGGTGTTGGTGTCACGGACCTGCTTGGTTATAATATGCAATTTCTGAGCAATGTGATTGTTGGATCCCCTGATAATGCCACTCTTGTAGCTGTTCTCCCTGCATTTGCTGAGAAAGCAAATATTCACGCAGGATATTGGATTCATGGATATATTGTCAAGACAGGGATGAAACTTGATCCTGATGTTGGTAGTGGTCTTGTATCATTGTACTCAAATTGTGGCTGTATAAGCATGGCACGAGCCATCTTTGATCAAATATCCAATAGGAATATCATTGTGTGGAATACAATAATTAGGTGTTGTAGGATGCATGGTTTTGCTAGTGGGGGGTGGAACAACGAAGATGAAAGAATTAGCTGTGGATATTCCAGCTTCAAAGGGAAAAGAATGACCATAGAAGATTTTTATGATATTAAGACATCTATCATTGACAGTCATTTGGTATGCTTGTTTGGAATATTTGATGGTCATGGTGGTTCTCGTGCTGCTGAACCCATCCTAATATCAATTAAGTATCAATTGAAAGAGGTAGATATATCAGATTTTATTGTTGGAAGACCAGAAGCAGAAGCTCTTGAAGTGATGACTATATTTTCTTCTGCGCTGGAAGGTTGTGTTTTGAGATACTTGAACCTGTCAAATAATGCCTTGGGTGAAAAGGGGGTTAGAGCATTTCAGTCACTCCTAAAATCGCAAAATAACTTGGAGGAGCTTTATTTGATGAATGATGGTATATTAGAGGAAGCTGCAAAAGCATTTTCTGAATTAATTGGGAAAGGTGTTGGCAAGGCTGTGGATAATGTGAATACAATTATAGCACCTGCTCTCCTTGGCTGCATGATTATAAACTCTGCTTTTGGAGGTCTATTTTGGAAGCTACTAGCTGAAGGATGTGATTTAGGTGCAATTCCTTTTATTTTCTTTTGTTGA 1596 0.4148 MSFLNSLAGNFWDDPWGNPWYSSTALYYPTVAPTPPSYFAKMVSKLHPWSSPRFKKKKKQCCAKKLSMIAESLEEVFSSSAATTTPSFSSASAAAPSSTFGSLDLHREEEDAPTGEDENTEVQVTPIIKLEEVALSTGEEDDEPIINLRTKLYRFDKDGNQWKERGVGTVKILNAKAVLDTVSDLNKSSVPENVCGLDRCIWISSELKELNDDCKYFESYSLGVGVTDLLGYNMQFLSNVIVGSPDNATLVAVLPAFAEKANIHAGYWIHGYIVKTGMKLDPDVGSGLVSLYSNCGCISMARAIFDQISNRNIIVWNTIIRCCRMHGFASGGWNNEDERISCGYSSFKGKRMTIEDFYDIKTSIIDSHLVCLFGIFDGHGGSRAAEPILISIKYQLKEVDISDFIVGRPEAEALEVMTIFSSALEGCVLRYLNLSNNALGEKGVRAFQSLLKSQNNLEELYLMNDGILEEAAKAFSELIGKGVGKAVDNVNTIIAPALLGCMIINSAFGGLFWKLLAEGCDLGAIPFIFFC. 532
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g03427 531 ProSiteProfiles Ran binding domain type 1 profile. 123 195 IPR000156 GO:0046907
Seca2g03427 531 SUPERFAMILY PP2C-like 339 389 IPR036457 -
Seca2g03427 531 SUPERFAMILY PH domain-like 126 175 - -
Seca2g03427 531 SMART ranbd_3 124 239 IPR000156 GO:0046907
Seca2g03427 531 SMART LRR_RI_2 454 481 - -
Seca2g03427 531 SMART LRR_RI_2 426 453 - -
Seca2g03427 531 Gene3D Ribonuclease Inhibitor 398 484 IPR032675 -
Seca2g03427 531 Gene3D - 335 397 IPR036457 -
Seca2g03427 531 SUPERFAMILY RNI-like 395 480 - -
Seca2g03427 531 Gene3D - 69 189 IPR011993 -
Seca2g03427 531 Pfam RanBP1 domain 135 177 IPR000156 GO:0046907
Seca2g03427 531 ProSitePatterns PPM-type phosphatase domain signature. 372 380 IPR000222 GO:0043169
Seca2g03427 531 Gene3D Tetratricopeptide repeat domain 234 334 IPR011990 GO:0005515
Seca2g03427 531 PANTHER RAN GTPASE-ACTIVATING PROTEIN 1 378 479 IPR045203 GO:0005096
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g03427 Seca-Chr2 105729173 105731062 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g03427 327 386 PP2C-type Phosphatase Gene Family AT5G53140 68.333 1.94e-22 97.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g03427 K14319 - gmx:100819800 163.696