Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g03398 ATGTCAAGTACTCTTGCAGCAATATTAGGAGGAGCTGCAGGAGCCGTGGCATTGGTAGGGATAGCTATAATACTTCTATGGTTCTGTCTTTCTCGCCAGAGGAGTGTTTCTAGGACTTCAGAGACAGGATCCTCTGATCCTTCCCAAGTGGGGAGACATGGTGCAATTGAATTGCCAATTCGAGATACTAGGCGTTTTGAGATGGAAGAACTTTCTTTGGCAACAAATAATTTCAGTGACAAAAATTTGATTGGACATGGGAAATTTGGGGAGGTTTACAAGGGTTTACTTCAAGATGGGATGCTTGTAGCCATCAAAAAGCGCCGTGGACTCCCTACTCAGGAATTTGTTGATGAGGTACGCTATCTCTCATCTATTCACCATCGGAATCTCGTGTCTCTCTTAGGCTACTGCCAGGAAAACAATCTACAGTTTCTTATATATGAATATGTGCCTAATGGATGCGTCTGCACTCACTTGTATTCGTTGCTGTATGCCGCTGGTCGACAGAAGCTAGAATTCAAGCATAGACTTTCAATAGCTCAAGGTGCAGCTAAAGGTTTGGCTCATCTCCACTCTTTGAGTCCCCGATTGGTGCATAAGAATTTCAAAACAGCTAATGTTCTTGTGGATGAAAACTTCATTGCTAAGGTCGCAGATGCAGGACTTCATAATTTCTTGGGGAGAAATGACATTGAGGGCTCATCTTCTCAATGTTTGCTACCAGATGAGATATTCCTTGCACCTGAGGTGAGAGAGTTCAGACAATTTTCTGAAAAGAGTGATGTATACAGCTTTGGTGTATTTTTGCTGGAATTGTTGAGTGGAAAGGAAGCAACATATACACCCTTTCCAGACACTGCGCTAGATCTGGTTGAATGGGTGCTAAGTAATCCAGTCCATGTCATTTTGTCCGACCTCATTGATCAAAGATTGGAGAGGAGTAGTTTCACAGGTGAAGTAATGGAAGATTTCATCGTGCTGGGGATCAGATGTATAAATCCTTCAAGTGAAGGACGACCTACCATGAGCTATGTGGAAATGGAACTTGATCGGATCATAGATAAAGAGATGAACTTGACAACAATTATGGGTGAAGGAACTCCCACTGTGACTCTTGGAAGACCCAATCTTTCTCCTCTTCCTCCTCCTCCTCCTCCTTCACATTCACAAGGAAATTCGACGGAAGAAGTCACTCCCGCCACGAGCCCAAATGTCTCTCGCGAATACGATCTCGCCGTTCAGGCTCCCTCCTACAACGAGATTCGCTCCATGATTCAAGCTCCTCCAGAGGTCCACCACCTCGAAGACGAAAACGACGAGGACTTGCACCACCGCTATGTCCTGGATCAAGTTCTTCAACCCGACCCGAATAGCATCCGTGAAGTGCTCTCGAACGCTAAACCTAGCAGCACCCTCACGCGCCTCGTGTCGTCTTACTTTGACCACAGCGAAACCACCTCCCATCTCTGCCTCCTCCTCTGCCGCTCCGTCCACCGCGCTCGCGACATCTACACGCCTCTCTCCGAACTCATCTCCGTTCTCCCCGCCGATTCCTCCTTCCTCTCTCAACCACAATGCGACCATGCCTATGACCTCTTCCTTCAATTCGACCAACACGAAAATCCGTTCATCTTTCCTCATTTTCATACTTTGCGCCACAGCTTCTCCGATCTCCGGCGAAACATCCAGCACGACCGCCGCAAATGCCGCTCTAGAATTCGCCTGCTTCGACACTCCACCGCCGGTTGTGCTGTCTGTCTCATCGCCACCACCACCGCTGCTGTGGTTTCCGCTGCGATAATCGCCGCACATGCTGCCGTTGGATTTGCCGCCATTGCTGCCGCGCCGTTTTGTATTCCGAAGAAAAGTGAGAGGAAGGAACGTGCGAGGTTGAAGCAGCTTGATGCGGCGGAGAATGGTACGTTTGTGGTGAATGATATTGAGACAATTGATAGTCTCCTTGATCGGCTTCAAACTGCAGTTGAAGGTGATAAAGCTCATGTTCGGTTTGCGTTGGAGAGGGGAAGGGATAGACACCCTATACAGGAGGTGCTCAAGCAGCTACGCAAGACACAACCAATTTTTGAGCAGTTGCTTAAGGATCTTGAGCAACATATATTCCTCTGCTTCTACACTGTTAACAAAGCTAGAAATGCACTCCTCAAAGAGATAAGCCTTCATCAAACTTCGTAG 2196 0.475 MSSTLAAILGGAAGAVALVGIAIILLWFCLSRQRSVSRTSETGSSDPSQVGRHGAIELPIRDTRRFEMEELSLATNNFSDKNLIGHGKFGEVYKGLLQDGMLVAIKKRRGLPTQEFVDEVRYLSSIHHRNLVSLLGYCQENNLQFLIYEYVPNGCVCTHLYSLLYAAGRQKLEFKHRLSIAQGAAKGLAHLHSLSPRLVHKNFKTANVLVDENFIAKVADAGLHNFLGRNDIEGSSSQCLLPDEIFLAPEVREFRQFSEKSDVYSFGVFLLELLSGKEATYTPFPDTALDLVEWVLSNPVHVILSDLIDQRLERSSFTGEVMEDFIVLGIRCINPSSEGRPTMSYVEMELDRIIDKEMNLTTIMGEGTPTVTLGRPNLSPLPPPPPPSHSQGNSTEEVTPATSPNVSREYDLAVQAPSYNEIRSMIQAPPEVHHLEDENDEDLHHRYVLDQVLQPDPNSIREVLSNAKPSSTLTRLVSSYFDHSETTSHLCLLLCRSVHRARDIYTPLSELISVLPADSSFLSQPQCDHAYDLFLQFDQHENPFIFPHFHTLRHSFSDLRRNIQHDRRKCRSRIRLLRHSTAGCAVCLIATTTAAVVSAAIIAAHAAVGFAAIAAAPFCIPKKSERKERARLKQLDAAENGTFVVNDIETIDSLLDRLQTAVEGDKAHVRFALERGRDRHPIQEVLKQLRKTQPIFEQLLKDLEQHIFLCFYTVNKARNALLKEISLHQTS. 732
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g03398 731 MobiDBLite consensus disorder prediction 366 409 - -
Seca2g03398 731 ProSitePatterns Protein kinases ATP-binding region signature. 84 107 IPR017441 GO:0005524
Seca2g03398 731 Gene3D Transferase(Phosphotransferase) domain 1 158 366 - -
Seca2g03398 731 MobiDBLite consensus disorder prediction 376 390 - -
Seca2g03398 731 SUPERFAMILY Protein kinase-like (PK-like) 59 347 IPR011009 -
Seca2g03398 731 Pfam Protein tyrosine and serine/threonine kinase 82 346 IPR001245 GO:0004672|GO:0006468
Seca2g03398 731 ProSiteProfiles Protein kinase domain profile. 78 354 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca2g03398 731 FunFam Protein kinase superfamily protein 43 150 - -
Seca2g03398 731 FunFam Protein kinase superfamily protein 151 367 - -
Seca2g03398 731 MobiDBLite consensus disorder prediction 391 409 - -
Seca2g03398 731 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 14 362 IPR047117 -
Seca2g03398 731 Gene3D Phosphorylase Kinase; domain 1 44 150 - -
Seca2g03398 731 Pfam Protein of unknown function (DUF677) 469 725 IPR007749 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g03398 Seca-Chr2 104873261 104879878 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g03398 66 371 Trihelix Transcription Factor Family AT5G38560 37.580 5.41e-54 196
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXa Seca2g03398 DUF677 1.8e-14 CL0133
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g03398 - - gmx:100305436 577.785
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca10g05028 10 115787236 115792883 Seca2g03398 2 104873261 104879878 PCT