Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g03387 ATGCAGGACCCATCCAAGCAGCCTTTACATCAAGGTGTCAATGCAAGAAAGAGACATTATAGAGGTGTTAGGCAGAGACCATGGGGCAAATGGGCAGCCGAAATCCGCGACCCTAAAAAGGCAGCTAGAGTGTGGCTTGGAACCTTTGACACCGCAGAAGCTGCAGCAGCTGCTTATGATGCTGCTGCCTTAAAGTTCAAAGGAACCAAAGCTAAACTCAATTTTCCAGAACGTGTTATTACTCCATCAGATTACAACACTAGTACTACTATTACTTCACTTTATAACTATGCTTCATCAGGTTCTACAGCACCAACACCAACACCACATCATGAGGCTCCATCGCTTCATCTTCCACCTCCCTTATCATCATCAGAAGGAGGATTTCCTAACCTAATGCAATACGCGCAGGTTCTTTGGAGTAAGGATGATGATGATCTACAACGTGCTGCTTCTGGTCTTCAACAGTATCCTAATGATCCGTTTCTTTATTGTGATGATTCGAGTTCAATGTTGTTCTCATCTTCATCGGCAAGTTCTATGGATCAACAACAGGTTGGAGATAACATGAGTGCTCCCAAGGGAGATTATGGTTTCAAATGGAGTGGTTTTCATGAGAGGAATTAA 627 0.4354 MQDPSKQPLHQGVNARKRHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFDTAEAAAAAYDAAALKFKGTKAKLNFPERVITPSDYNTSTTITSLYNYASSGSTAPTPTPHHEAPSLHLPPPLSSSEGGFPNLMQYAQVLWSKDDDDLQRAASGLQQYPNDPFLYCDDSSSMLFSSSSASSMDQQQVGDNMSAPKGDYGFKWSGFHERN. 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g03387 208 SUPERFAMILY DNA-binding domain 19 77 IPR016177 GO:0003677
Seca2g03387 208 PANTHER DNA-BINDING DOMAIN 14 160 IPR044808 GO:0003700|GO:0009873
Seca2g03387 208 MobiDBLite consensus disorder prediction 100 123 - -
Seca2g03387 208 PRINTS Ethylene responsive element binding protein signature 20 31 IPR001471 GO:0003700|GO:0006355
Seca2g03387 208 PRINTS Ethylene responsive element binding protein signature 42 58 IPR001471 GO:0003700|GO:0006355
Seca2g03387 208 FunFam Ethylene-responsive transcription factor 2 18 77 - -
Seca2g03387 208 CDD AP2 19 77 IPR001471 GO:0003700|GO:0006355
Seca2g03387 208 MobiDBLite consensus disorder prediction 1 23 - -
Seca2g03387 208 ProSiteProfiles AP2/ERF domain profile. 19 76 IPR001471 GO:0003700|GO:0006355
Seca2g03387 208 SMART rav1_2 19 82 IPR001471 GO:0003700|GO:0006355
Seca2g03387 208 Pfam AP2 domain 19 68 IPR001471 GO:0003700|GO:0006355
Seca2g03387 208 Gene3D AP2/ERF domain 18 78 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g03387 Seca-Chr2 104489225 104491764 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g03387 1 154 AP2-EREBP Transcription Factor Family AT5G13330 49.091 1.89e-40 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Seca2g03387 AP2 1.2e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g03387 - - gsj:114398791 223.787
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca2g03387 2 104489225 104491764 Seca10g05023 10 115671969 115673984 PCT