Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g03379 ATGAATGCTAATGGATGCAAGTGCAAAGGCATGTGTATTGATCCGACAACTTGTGAATGTGCATTGCGTAATGGCTCTGATTTTCCCTATGTATCTCGGAATGGTGGCAGGTTAGTTGAAGCTAAAGATGTTGTGTTTGAATGCGGCCCTAAATGTGGTTGTGGTCCTGGTTGTGTGAACCGAACTTCTCAAAGAGGACTTAGATATCGTCTGGAGGTTTTCCGTACTGCGAAAAAAGGATGGGCTGTTAGATCCTGGGATTTTATACCTTCTGGAGCACCAGTTTGTGAGTACACAGGAATACTTGCTAGGACGGAAGATATGGAAAGTGTATTGGAAAACAATTATATTTTTGAGATAGATTGCTTGCAAACAATGAAAGGGCTTGGTGGAAGAGAGAGGCGGTCACAAAATGAAGTGATTCCTGCTAACCTTTTGGACAAATGTGATGACCAAAGTTCTGAAAGTGTGCCGGAGTTTTGTATTGATGCAGGATCTACTGGAAATATTGCTAGGTTTATAAACCATTGCTGTGAGCCTAATCTGTTTGTTCAATGTGTTTTGAGCACTCACCATGATTTGAAATTAGCTCGAGTAATGCTGTTTGCTGCTGACAACATACCCCCAATGCAGGAACTGACATATGACTATGGCTATGTGCTTGATAGCGTCTTGGACTCAGATGGGAAGATAAAGCAAATGCCATGCTATTGTGGAGCCGCAGGCTGCAGGAAGCGATTATTCTAA 747 0.4244 MNANGCKCKGMCIDPTTCECALRNGSDFPYVSRNGGRLVEAKDVVFECGPKCGCGPGCVNRTSQRGLRYRLEVFRTAKKGWAVRSWDFIPSGAPVCEYTGILARTEDMESVLENNYIFEIDCLQTMKGLGGRERRSQNEVIPANLLDKCDDQSSESVPEFCIDAGSTGNIARFINHCCEPNLFVQCVLSTHHDLKLARVMLFAADNIPPMQELTYDYGYVLDSVLDSDGKIKQMPCYCGAAGCRKRLF. 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g03379 248 Gene3D SET domain 1 248 IPR046341 -
Seca2g03379 248 Pfam Pre-SET motif 3 61 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Seca2g03379 248 SUPERFAMILY SET domain 4 245 IPR046341 -
Seca2g03379 248 ProSiteProfiles Post-SET domain profile. 232 248 IPR003616 -
Seca2g03379 248 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 4 240 - -
Seca2g03379 248 SMART PostSET_3 232 248 IPR003616 -
Seca2g03379 248 ProSiteProfiles SET domain profile. 69 218 IPR001214 GO:0005515
Seca2g03379 248 ProSiteProfiles Pre-SET domain profile. 4 66 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Seca2g03379 248 Pfam SET domain 80 218 IPR001214 GO:0005515
Seca2g03379 248 SMART set_7 69 224 IPR001214 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g03379 Seca-Chr2 103796683 103798533 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g03379 2 248 EF-hand Containing Proteins AT5G13960 66.667 4.14e-124 360
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Seca2g03379 SET 1.5e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g03379 K11420 - gmx:100795584 472.241