Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g03372 ATGTCCATCTTGCCCTCACAAACCCAAGCGGCATCTCCATCCTCTTCATCTGCGCCATCTCCCAACCCTAATCCCCAACATGGAATTGCAAACAACCCTCTTTCAGAACCCTTCTCTCCATCTCTTTCCCCGCAACTCAATCACGCTCTCCGATCTCTCCAGATCTCCGATAATCCAGGTCCATCAACTCCAGCTACAGACTATTCTGGTGGACCTTCCGAAAAGGTGACAGAATTGGGGTCTCCGAGTGGTATGAAGGCATCACCTCAGCAGAACTCCAGAACACAGTCTAGGAGTCACTCGGGAAGACGGACAATTGGATCGTACCAGTCTGTGGGGAAGACAACAGGAACTATGTCTTCTAATAGAAATCAACAGACTCCTGGCTCTGTAAATTCTCATGGAAGCACCCCTTCCACAGGGAGGAAGTCTCAGATGGTGAATGGCAATTACTTGCTCAATTTTCAGTATGATCCAATTTCCCGTTCTCAACCAAGGGGTCCTCCTCCTCCTCCTGCAAGAAGGCAGAGGAAGAGAAAACCATACAATAAAGATTTGTTTTTGCAGGCAAATTACAAATTCATGGTGCTAGATTCAGGAAATTATTCACCTGAGTCGATGGATCCTGATAAAATGTTGCAGTGGGAAGATATTATCTGTCTGACGTATTTGACCCCTTTTCCAGTCCAGTGTCCAATTTGTTTGGAGTATCCCCTGTGCCCTCAAATAACTTCATGTGGACATATTTTCTGTTTCCCCTGTATTCTACAATACTTATTTATGGGTGAAGAGGATCACAAAGGTGATTGCTGGAAAAGGTGTCCTTTATGTTTTGTGATGATATCTGCCAAGGATTTATATACACTCCACATCACAAATGTCAAACAGTATTGGGTAGGAGATAATGTTGAGTTCACTTTCTTAACGCGAAAAAAAGATTCGTTTACTCTGTCACATAAAAATAAACAGGATACAGATATCACATCATGTGGCAATGGAGATATATGTGATCCCTTTTCTAAGTTCACACTCACGTCAGATGTAGATCTCTCAGTGAGACATGCAATATCAGATCTAGATGGTTGGCTGGCTAAAGCTGATTCAGGTCTTGTTGATGACCTGGAGAGGCTCCCATATGTTTGTGCTGCAATGCAACAATTAGAACAGAGGAAGAAGTATTGGAATGAACACAAGGCTTGCGACAGTGAAAATTCTTCTAAGCTTATTGATTATGCCCATCAGATACCATCAACAGCTGCAAGTGCTATGGATACTGATGATAACTTTTCTAATGGATCAATGACTTCCTCTGCAGATATCCATGACCAAAGTAAGGTTATAATATTGGATAAGTCAATTGCTGGAGCCTGTCAGGATCAAACTTTGGATGCGGACAAAATATTAATGGAGCAGGAAATGAATTTATCTTCTTCTTATGAGGAGAAAAATGGTATCCAAAGGAATTCAAATAGCATTGGAGATGCAAAGGAAAATGATTCCTACAATTTCTATCAGGCTGCTGATGGTCAGCATCTAATTCTTCATCCTCTGAACATGAAATGTTTACTTCACCATTATGGGGACTATGATATGCTTCCTCACAGAATAAGTGGAAGGGTTCTACAATTGGAGACAGTTACTCAGTCTGAGGCCATGAGGAGGCGGTATCGATTCCTAAGTCATTTTCCATTAACCACAACATTTCAGGTGCCTTTTAAAATAGAGATATCTAGTTCCAAGATATTTTCTTATGATTTATAA 1761 0.414 MSILPSQTQAASPSSSSAPSPNPNPQHGIANNPLSEPFSPSLSPQLNHALRSLQISDNPGPSTPATDYSGGPSEKVTELGSPSGMKASPQQNSRTQSRSHSGRRTIGSYQSVGKTTGTMSSNRNQQTPGSVNSHGSTPSTGRKSQMVNGNYLLNFQYDPISRSQPRGPPPPPARRQRKRKPYNKDLFLQANYKFMVLDSGNYSPESMDPDKMLQWEDIICLTYLTPFPVQCPICLEYPLCPQITSCGHIFCFPCILQYLFMGEEDHKGDCWKRCPLCFVMISAKDLYTLHITNVKQYWVGDNVEFTFLTRKKDSFTLSHKNKQDTDITSCGNGDICDPFSKFTLTSDVDLSVRHAISDLDGWLAKADSGLVDDLERLPYVCAAMQQLEQRKKYWNEHKACDSENSSKLIDYAHQIPSTAASAMDTDDNFSNGSMTSSADIHDQSKVIILDKSIAGACQDQTLDADKILMEQEMNLSSSYEEKNGIQRNSNSIGDAKENDSYNFYQAADGQHLILHPLNMKCLLHHYGDYDMLPHRISGRVLQLETVTQSEAMRRRYRFLSHFPLTTTFQVPFKIEISSSKIFSYDL. 587
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g03372 586 ProSitePatterns Zinc finger RING-type signature. 246 255 IPR017907 -
Seca2g03372 586 MobiDBLite consensus disorder prediction 1 145 - -
Seca2g03372 586 MobiDBLite consensus disorder prediction 83 145 - -
Seca2g03372 586 SUPERFAMILY RING/U-box 230 284 - -
Seca2g03372 586 ProSiteProfiles Zinc finger RING-type profile. 231 277 IPR001841 -
Seca2g03372 586 SMART ring_2 231 277 IPR001841 -
Seca2g03372 586 PANTHER RING FINGER 10 FAMILY MEMBER 86 570 IPR039739 -
Seca2g03372 586 MobiDBLite consensus disorder prediction 1 70 - -
Seca2g03372 586 FunFam RING finger protein 10 224 292 - -
Seca2g03372 586 CDD RING-HC_RNF10 229 286 - -
Seca2g03372 586 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 226 305 IPR013083 -
Seca2g03372 586 MobiDBLite consensus disorder prediction 158 181 - -
Seca2g03372 586 Pfam Zinc finger, C3HC4 type (RING finger) 231 277 IPR018957 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g03372 Seca-Chr2 103427372 103434783 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g03372 129 570 C3H Transcription Factor Family AT3G26730 56.798 9.91e-179 521
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g03372 K26979 - gmx:100798764 859.751
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca2g03372 2 103427372 103434783 Seca2g03372 2 103427372 103434783 ECH