Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g03359 ATGGACAGATACTCGCTACCCTTACCACCCAGACCTCAAACTCACACCGTTCCTTGGATGGAACCACAGCTGGAAGAAGACGACTCAGCAGCCTCATGGCCCAGACCTAACTCCGAACCTAAACACAACGAGAACCAAGACATTACCGCCATTGCCATGGGTGCTCCTCTTCTCCCTTTCTTGAAACCCATTCTGGAACCCGAACCAGTACCAGAACCCAAACCTGACTACTACTACACCAATGTTGTTAATGTTCCCTTTGTTCCAAACCCAGCAACAACAGATAACTTTCTCATGCACCAAAACATCAATATGGAACCTTTCCCTCTAGACCCATCTCCTTCACACCCTTTCTTTAGCAACAACAATAGCATTAACAATAACCCTTTTGACACCGCCTTCGAAAGTGGGTTCTTCATGGGGAACCATTCTTCCAATTCCCCGGTTTTGATGGGTTCTTCTAGCTCTCAGCCTCTGGTGGGTAACATCGACCTGAGTTCGTGCTCCGAGTTCCCACCGACTCTCGAACTCGAAGCCTTTAACGCACCGTTTTCGAGGCCTGTTGAGGTGGCGCAACCCACCACGCTGTTCCAGAAGCGGCGAGGGTCGGTGGAGATTTCCAGGTTGGAGACGGTGAAGAAGGGGAAATGGGAAGAAGGGGATGTTGAGATTGATGATTCAGGGTTGAATTATGATTCGGATGAGAATGGGAATGATTTGAACCCAAGTGGTAATGTGAGTGTCACTGGTGGTGGTGGAGACCACAAGGGGAAGAAGAAAGGGATGCCTGCAAAGAATCTCATGGCTGAGAGGCGTAGGAGGAAGAAACTCAATGATAGGTTGTACATGCTTAGGTCTGTTGTGCCAAAGATTAGCAAGATGGATAGGGCTTCAATACTTGGGGATGCAATTGACTACTTGAAGGAGCTGCTGCAGCGGATTAATGATCTTCATAATGAACTGGAGTCAACTCCAGCTGGCTCATTGGTGCCATCTTCTACAAACTTTCAACCTTTGACACCCACTCCGCCAACCCTTCCCTGCCGGGTCAAGGAGGAGCTATATCCTGGTGCCTTGCAAAGCCCTAAAAACCAACCTGTGAAGGTGGAAGTTAGGGTAAGGGAAGGGAGAGCTGTCAACATTCATATGTTTTGTACCCGCAGACCAGGGCTTTTGCTTTCTACCATGAGGGCTTTGGATAACCTGGGGTTGGATGTTCAGCAGGCTGTAATTAGCTGTTTCAATGGCTTTGCTTTAGATGTGTTCAGAGCTGAGGTATGGTTCTTTCTCTAG 1293 0.4849 MDRYSLPLPPRPQTHTVPWMEPQLEEDDSAASWPRPNSEPKHNENQDITAIAMGAPLLPFLKPILEPEPVPEPKPDYYYTNVVNVPFVPNPATTDNFLMHQNINMEPFPLDPSPSHPFFSNNNSINNNPFDTAFESGFFMGNHSSNSPVLMGSSSSQPLVGNIDLSSCSEFPPTLELEAFNAPFSRPVEVAQPTTLFQKRRGSVEISRLETVKKGKWEEGDVEIDDSGLNYDSDENGNDLNPSGNVSVTGGGGDHKGKKKGMPAKNLMAERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAIDYLKELLQRINDLHNELESTPAGSLVPSSTNFQPLTPTPPTLPCRVKEELYPGALQSPKNQPVKVEVRVREGRAVNIHMFCTRRPGLLLSTMRALDNLGLDVQQAVISCFNGFALDVFRAEVWFFL. 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g03359 430 CDD ACT_UUR-ACR-like 381 422 - -
Seca2g03359 430 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 261 310 IPR011598 GO:0046983
Seca2g03359 430 Gene3D - 255 325 IPR036638 GO:0046983
Seca2g03359 430 MobiDBLite consensus disorder prediction 225 265 - -
Seca2g03359 430 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 264 328 IPR036638 GO:0046983
Seca2g03359 430 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 143 425 - -
Seca2g03359 430 Coils Coil 304 324 - -
Seca2g03359 430 CDD bHLH_AtAMS_like 264 334 - -
Seca2g03359 430 MobiDBLite consensus disorder prediction 1 43 - -
Seca2g03359 430 Pfam Helix-loop-helix DNA-binding domain 268 310 IPR011598 GO:0046983
Seca2g03359 430 MobiDBLite consensus disorder prediction 233 248 - -
Seca2g03359 430 FunFam BHLH transcription factor 257 325 - -
Seca2g03359 430 SMART finulus 267 316 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g03359 Seca-Chr2 102969918 102976257 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g03359 74 429 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G26744 54.245 4.20e-116 346
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Seca2g03359 HLH 1.6e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g03359 - - psat:127126761 487.648
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca10g05021 10 115559057 115562947 Seca2g03359 2 102969918 102976257 PCT