Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g03356 ATGCCTAACCGTAGCCTCGACCGCATACTCTTCCGGAGGAATGAGAAATTGAAGGCTGAGCCTCTTGATTGGGGGCAAAGGGTGAAAATTATGAAAGGTCTGGCAGCTGCATTGTATTATCTGCATGAACAGTTAGAAACTCAAATCATTCATAGGGATGTTAAGACAAGCAATGTAATGCTTGATTCCCATTTCAATGCTCGCTTGGGTGACTTTGGCATGGCAAGGTGGTTAGAACATGAGCTTGAGTATAAATTGGGAGAGACATCAAGGATTGGTGGTACAATTGGGTATCTTCCCCCTAAAAGCTTGCAGAAACCAAGCAATGCTACCTCCAAATCTGATGTATTCAGCTTTGGCATAGTTGTGCTAGAGGTGGTATCTGGAAGGAGAGCAATAGATCTCACATGCCCAGATGATCAAATCATTTTGCTTGATTGGATCAGAAGGCTTTCTGATGAAAGGAAGGTTCTAGAGGCAGCTGATACTAGGCTACAAGATGGATCCTACAAGCTTTCTGAGATGCATCATCTCATTCACATAGGTCTTCTCTGCACACTCCATGACCCACAATTGAGGCCAAGCATGAAATTACCAAATCAACACATAATCAGAAATTACCAAATCAACACATAA 636 0.4261 MPNRSLDRILFRRNEKLKAEPLDWGQRVKIMKGLAAALYYLHEQLETQIIHRDVKTSNVMLDSHFNARLGDFGMARWLEHELEYKLGETSRIGGTIGYLPPKSLQKPSNATSKSDVFSFGIVVLEVVSGRRAIDLTCPDDQIILLDWIRRLSDERKVLEAADTRLQDGSYKLSEMHHLIHIGLLCTLHDPQLRPSMKLPNQHIIRNYQINT. 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g03356 211 Pfam Protein kinase domain 22 200 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca2g03356 211 SMART serkin_6 1 205 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca2g03356 211 ProSiteProfiles Protein kinase domain profile. 1 205 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca2g03356 211 ProSitePatterns Serine/Threonine protein kinases active-site signature. 49 61 IPR008271 GO:0004672|GO:0006468
Seca2g03356 211 FunFam Receptor like protein kinase S.2 1 206 - -
Seca2g03356 211 SUPERFAMILY Protein kinase-like (PK-like) 1 197 IPR011009 -
Seca2g03356 211 PANTHER - 1 197 - -
Seca2g03356 211 Gene3D Transferase(Phosphotransferase) domain 1 1 207 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g03356 Seca-Chr2 102750616 102751287 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g03356 1 197 Receptor kinase-like Gene Family AT5G55830 49.246 3.19e-53 179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Seca2g03356 Pkinase 7.6e-25 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g03356 - - gmx:100796108 352.443