Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g03340 ATGATGATGGATCAGCGACAGCGAGAGAAGAAGCTCCTTCGCAAAACCGAGGCCTGTGGTTTTATGGCAGGTGTTGGGGCTGAGCTTCGTTTTGTCACCATGTCAGGGAACAACAAGAAGAGCAACAAGATAACTACTACTACTACTAGTACTAACGGGTCGGGTCGGATCCATGATAATGGTCTTGGCCTTGTTAATGCGGTTACTACCTCCTTCGGAACTGTTCAGAGGAAGAAAAGGATGGCAAGACAGAGAAGATCCTCCAACAACAACAACACATTGATGCACCATTCCCCTTCTTCCAAGCTCAACCCTCCTCCTCCTTCAACTTCCTCGCACGTGCCATTCTCCTCTACTCTCCCTTCCGCACGTGAAATTGATCATACAAGGTTGAGATTCCTTTTCCAAAAGGAGCTGAAGAACAGTGATGTTAGCTCCCTTAGGAGAATGATATTGCCAAAGAAAGCAGCTGAAGCATTCCTTCCTGCCCTTGACTCAAAGGAAGGAATTCTTATCAGCATGGATGATATAGATGGTCTTCATGTATGGAGTTTCAAATACAGATTTTGGCCTAACAACAATAGCAGGATGTATGTACTTGAAAACACTGGAGACTTTGTGAACACACATGGCCTTAGATTTGGAGATTCCATTATGGTCTACCAAGATAGTCAAAACCATAACTATGTTATTCAGGCCAAGAAAGCTTCTGATCATGATGAATTTATGGAAGAAACCAGTGATACTGCCAATGATATCTTCCTTAATGATTATGAAGTGATCAAACCTGATTGCTTCAATATAACCTATCCTGCAATGAATGATGCAGACATGTCATTCATATATGAGACTACCTTCTCAAATGACTCCCCTCTTGATTTCTTGGGTGGATCAATGACTAATTTTTCAAGGATTGGACCAGTTGAAACCTTTGGTTCTGTTGAGAATTTGTCCCTTGATGACTTCTATTAA 972 0.4208 MMMDQRQREKKLLRKTEACGFMAGVGAELRFVTMSGNNKKSNKITTTTTSTNGSGRIHDNGLGLVNAVTTSFGTVQRKKRMARQRRSSNNNNTLMHHSPSSKLNPPPPSTSSHVPFSSTLPSAREIDHTRLRFLFQKELKNSDVSSLRRMILPKKAAEAFLPALDSKEGILISMDDIDGLHVWSFKYRFWPNNNSRMYVLENTGDFVNTHGLRFGDSIMVYQDSQNHNYVIQAKKASDHDEFMEETSDTANDIFLNDYEVIKPDCFNITYPAMNDADMSFIYETTFSNDSPLDFLGGSMTNFSRIGPVETFGSVENLSLDDFY. 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g03340 323 CDD B3_DNA 133 235 IPR003340 GO:0003677
Seca2g03340 323 MobiDBLite consensus disorder prediction 38 61 - -
Seca2g03340 323 FunFam B3 domain-containing transcription factor FUS3 131 246 - -
Seca2g03340 323 SUPERFAMILY DNA-binding pseudobarrel domain 133 231 IPR015300 -
Seca2g03340 323 SMART B3_2 135 237 IPR003340 GO:0003677
Seca2g03340 323 ProSiteProfiles B3 DNA-binding domain profile. 135 237 IPR003340 GO:0003677
Seca2g03340 323 MobiDBLite consensus disorder prediction 74 121 - -
Seca2g03340 323 Pfam B3 DNA binding domain 135 232 IPR003340 GO:0003677
Seca2g03340 323 MobiDBLite consensus disorder prediction 38 57 - -
Seca2g03340 323 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 55 244 IPR044800 GO:0003700
Seca2g03340 323 Gene3D - 131 250 IPR015300 -
Seca2g03340 323 MobiDBLite consensus disorder prediction 86 100 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g03340 Seca-Chr2 102198360 102201250 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g03340 40 323 B3 DNA Binding Superfamily AT3G26790 50.314 9.73e-88 264
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Seca2g03340 B3 2.1e-15 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g03340 K09287 - gmx:100783961 480.33
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca2g03340 2 102198360 102201250 Seca2g03340 2 102198360 102201250 ECH