Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g03325 ATGCCGTTGCCGTGTGACTACTGCGACTCCAAAAGCGCGGTGCTGTATTGCAGAGCAGACTCGGCGAAACTATGCTTAGTGTGCGACCAGCACGTGCACTCCGCCAACGCCCTCTCCCTCAAGCACGTGCGATACCAGATTTGCGAAAACTGCAAAAACGACACCGCTTCGGTTCGATGCTCCACCGACAACCTCCTCCTCTGTAACCGCTGCGACTGGGACGCACACGGCGGCTCCTCTGCTCTCAGCCACCACATCCGCCACCGCCTCGAGGGTCTCTCCGGCGTCCCTTCCGTTCCCGAGATCGTCTCTGTCCTCGGCCTCGATTTGAAGCCCGACGACGTCGTTTCGGTGTCTGACTTCGAGGGTCCAGTGGTTCCCGTTTTTCCGTCGTCGAAGAGTCAGAGCTTGACTTGCGGCAAGCATAGGGATGAGGTGTATGAACAGTTGGTGGAAATTGCGAAGAGGAATAGGAGCCTGTGTGGGGAAGATGTTGAATTCGAATTCAATGATAGTAGCAACGATGTTGGTGATTTGTTGCTGCAGCAAACTACTCCGTTTACTTCTTTGCTCACTTTGCCTTCGGAATTTGACAATGATTTGAGAAAAAACCATGATTATGGAACTGAAGAAGCAGGGGATCTTGTCTGGAATTGTAATCCCCAATATCAGCCTCCTCAGGTGTGGGATTTTCAGTTACAGAAATCAAGAGATTGCAATGAAGCAAGAGTGGTGATGTTTGATAGTCTAGAAGAAGCTTCCCTATCGATTCCAAAATCATTGCAAGATATGGACAATATAAATTGCTCTACAATTGATGATATTCTATCAAGAAATGCATGTGCAAGAAGTTATAACCTACTACTTGTCACTCCTTGTAAAGTGAGAATCATTGGATTGCAATTGTTTGTGGGAAGGGAATGTGATGAAATGGTTGAATGGATGATGCAAAGGCATACTGACTGTGTATCATTGATTGAGGCTCTCTATTGTGAGGACGTTGGTGGAATATACAAATGCTCTATAGGGTTCTTTGTCTTCCTGTCATTTTGA 1053 0.4739 MPLPCDYCDSKSAVLYCRADSAKLCLVCDQHVHSANALSLKHVRYQICENCKNDTASVRCSTDNLLLCNRCDWDAHGGSSALSHHIRHRLEGLSGVPSVPEIVSVLGLDLKPDDVVSVSDFEGPVVPVFPSSKSQSLTCGKHRDEVYEQLVEIAKRNRSLCGEDVEFEFNDSSNDVGDLLLQQTTPFTSLLTLPSEFDNDLRKNHDYGTEEAGDLVWNCNPQYQPPQVWDFQLQKSRDCNEARVVMFDSLEEASLSIPKSLQDMDNINCSTIDDILSRNACARSYNLLLVTPCKVRIIGLQLFVGRECDEMVEWMMQRHTDCVSLIEALYCEDVGGIYKCSIGFFVFLSF. 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g03325 350 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Seca2g03325 350 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 4 265 - -
Seca2g03325 350 ProSiteProfiles Zinc finger B-box type profile. 43 89 IPR000315 GO:0008270
Seca2g03325 350 CDD Bbox1_BBX-like 4 47 - -
Seca2g03325 350 SMART bboxneu5 1 47 IPR000315 GO:0008270
Seca2g03325 350 Pfam B-box zinc finger 44 89 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g03325 Seca-Chr2 101847348 101851204 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g03325 3 241 C2C2-CO-like Transcription Factor Family AT2G33500 40.840 1.69e-48 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Seca2g03325 zf-B_box 1.7e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g03325 - - aprc:113862926 324.709
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca2g03325 2 101847348 101851204 Seca2g03325 2 101847348 101851204 ECH