Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g03316 ATGGCAGACCCTGCAGCTATCTACCGGTTCCTGAAGCAGCCACCAAGAGCAGGTGCAAAAAGATCACAACCCCACCCTCCACCCTCAATCCGCACGTTCCAATGCCACTTTTGCCACCGCAACTTCTTCACTTCCCAAGCTCTTGGAGGTCACCAAAACGCTCACAAGCTTGAAAGAGCAGCTGCTAGAAGAACCAATGTCCCTAATAACAACATGTCACCAGCACCATTGTCATTGGATTCTTCTCTCAAGATTACCGAGCACAAGCCCAGGCCCAAGCCCATGCCTGAACTCGAGCCGCCCAATCATTTATTCCATCACCCTTACTGGCTTGAAGTTGAGTCCTTACAGTTTCAGACCCATCACCATGTTGCAACTACTCTCCCTCTTCCCTTCCATCATCATCATGCTGATGCTTCTTCCACTTCCACCCCTCAACATGTTCTCTTCCATAACGCTGCACCCGATGCTTCTCACCATGTCAACCTCGACCTCACCCTTAGCTTGTGA 510 0.5059 MADPAAIYRFLKQPPRAGAKRSQPHPPPSIRTFQCHFCHRNFFTSQALGGHQNAHKLERAAARRTNVPNNNMSPAPLSLDSSLKITEHKPRPKPMPELEPPNHLFHHPYWLEVESLQFQTHHHVATTLPLPFHHHHADASSTSTPQHVLFHNAAPDASHHVNLDLTLSL. 170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g03316 169 ProSiteProfiles Zinc finger C2H2 type domain profile. 33 60 IPR013087 -
Seca2g03316 169 SUPERFAMILY beta-beta-alpha zinc fingers 31 60 IPR036236 -
Seca2g03316 169 Gene3D Classic Zinc Finger 21 84 - -
Seca2g03316 169 PANTHER ZINC FINGER PROTEIN 5 24 169 IPR044299 GO:0010090
Seca2g03316 169 ProSitePatterns Zinc finger C2H2 type domain signature. 35 55 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g03316 Seca-Chr2 101494025 101494534 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g03316 27 64 C2H2 Transcription Factor Family AT5G14010 73.684 1.42e-12 60.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g03316 - - cam:101499960 171.4