Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g03298 ATGGAGGATATCATGAACTATGCTAAGGGTGGGAGTGTTAGATTACCTGTTGGGTACAGGTTTGATCCCACAGATGAGGTTCTTGTTAATTTCTACCTCAAGAGGAAGGTCTATGCTCTGCCTCTTCCTGCTCAAGTCATCCGAGAATTTGATGTTTTCCAAACAGAGCCATGGAAACTCCCCGGAGATAAAAAACTGTTCAAAGAGGGAAGGTACTTTTTTTTCAATACCAAGCTCCATGAGTTTCAGAACATGGATAAGAGGCCTTCTGCGACAGGAGAATGGAGAGTCATTGAAAAAGGCAAAGAAATTGCCATCCCCAGAAACAATCTGATATTGGGGAAGAGAAACACTCTTGTTTTCTGGGAAGGACAAGGGGCAAATCTCACCAAATCAAGATGGGTGATGCATGAATTTCGCCTTGCATCAACAGCAAATCCATCACGGGTAAAGAGAATAGAACAGTGA 468 0.4295 MEDIMNYAKGGSVRLPVGYRFDPTDEVLVNFYLKRKVYALPLPAQVIREFDVFQTEPWKLPGDKKLFKEGRYFFFNTKLHEFQNMDKRPSATGEWRVIEKGKEIAIPRNNLILGKRNTLVFWEGQGANLTKSRWVMHEFRLASTANPSRVKRIEQ. 156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g03298 155 Gene3D NAC domain 24 155 IPR036093 GO:0003677|GO:0006355
Seca2g03298 155 PANTHER NAC TRANSCRIPTION FACTOR 56 15 144 - -
Seca2g03298 155 ProSiteProfiles NAC domain profile. 15 155 IPR003441 GO:0003677|GO:0006355
Seca2g03298 155 Pfam No apical meristem (NAM) protein 16 141 IPR003441 GO:0003677|GO:0006355
Seca2g03298 155 SUPERFAMILY NAC domain 10 146 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g03298 Seca-Chr2 101137201 101138673 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g03298 3 141 NAC Transcription Factor Family AT5G13180 41.844 8.95e-34 117
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Seca2g03298 NAM 2.2e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g03298 - - lja:Lj6g3v0227250.1 186.037