LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca2g03297	ATGGCTGCTTACAAAGATAAGATGATTGGCCCAGATCGAATAGAGAATGAGTTTGAGGCCCCTGATTATGTTTACGTCTTAGATGCTGCAGAGAATGCTGGAGTTGAACTTCCCTATTCATGCTGTGCTGAAGCATGCTCTACCGGTGCTGGATTGGTGGATCAGTTTGATGGCTCATTCCCTGATGACAATCAGCTGAAGGAAGCTAATACCCCATCCCCAGTTCCATGGGAATTAGTAGTGTTAGCATTAAAAGCCATGATTCTACTCATTCTTCATAAGCTTGATGATGATAATAACCTGCCTTCATGCTTCAATTTTCACAAAGTGCATGACTGTGGAAGAGAAGAATTAGAAAGGAGAGACATAGATTTGTTGAAAGTTGCAACTGGAATGAAATCCACCTCTCCAGATGCTCCAAAATTTAGGAAAGTGTCTGAGGATAATACTTTCAGGTGTAAAATGGTTATTGAGCTTGGCTCTGGTTTTGGCTTGGCTGGATTTGTTATTGCAACCAAGCATAGATTTGTTGCTTCGAACTCCAAGGATGATCTTGCCAAGGAAACTGCTAGCTTTACTTTACATGTTATCACTATAAACCACCCTGGTCAGATTGGTAACAATTATGCTCTAGTGCTTGATTTCCACACTTCAAAAATTGCATTCAAATCTTTTGGCTTGAAGTCATCCTCTTCATGTATAGTCACTGCCATGGCTGCTTACAAAGTTAAGCTGATTGGCCCAGATCGAATAGAGAATGAGTTTGAGGCCCCTGATGATGTTTACATCTTAGATGCTGCAGAGAATGCTGGAGTTGAACTTTCCTATTCATGCCGTGTTGGAGCATGCTTTACCCGTGCTGGATCAGTGCATCAGTCTGATGGCTCATTCCCTAATGACAATCAGCTGAAGGAAGGTTTTCTGCTTACCTGCGTCTCCAATCCAACTTCAGGCTATGTAATTGAAACCAACACCTCTGTATCAACATCTTCTCTAGTAATCATGGCAACCATTTCAACTGTGAAGTTTTCCCCTCAATGCATGTTTAAAACTGCAAGCCGAAATCAATCCGCTGTTGCTAAAGGATGGCTTCCTTTAGTCATTGGAGTTATTCTTTATGTGGGTCTCAACTTTGTTGTATATAAGGCTTTGAAAGATTGGTTAATAAAATCCAAACCATTTGGTTTAGTTCAAGATTCTAAATTGAGTATAACAATTCGTCTGGCATGTGGTGTTGCAACTAACACCCCATTCCCAATTCCATGGGAATTAGTAGTGTTAGCATTAAAAGCCATGATTCTACTCATTCTTCATGCTCCAAAATTTGGTAAAGTGTTTGAGGATAGTAATTTTAAGATATGCAAAGGGTACAACACTGACAACATTGGGCTTGTTTGTAATTGGCCATTTGAAGATGTTCTTGCTCACTATTGCTTGTCACATGCAGATACTTTCAAGTCTAAAAAGGTTATTGAGCTTGGCTTTGGTTTTGGCTTGGCTGGATTTGTTATTGCAACCAAGCTTAGATTTGTTGCTTCGAACTCCAAGGATGATCTTGCCAAGGAAGTTGCTACCTTTACTTCACAGGTTATCACTATAAACCACCCTGGTCAGATTGGTAACGATTATGCTCTAGTGCTTGATTGCCACACTTCACAAATTGCATTCAAGTTTTCTGAGCTCTTGACCAAGATTGTTAGGAGATCAGGAGTGCTTCAGAAGGAGCCTAAGTTCTTGAAGAATGGCGATGCATGGAAGGTGAAGATGGTTCCCACAATGCCTATGGTTGTTGAAAATTTCTCTTGGTTCTCTTGTTTTCAAGTTGGTATTGGTTGA	1836	0.4047	MAAYKDKMIGPDRIENEFEAPDYVYVLDAAENAGVELPYSCCAEACSTGAGLVDQFDGSFPDDNQLKEANTPSPVPWELVVLALKAMILLILHKLDDDNNLPSCFNFHKVHDCGREELERRDIDLLKVATGMKSTSPDAPKFRKVSEDNTFRCKMVIELGSGFGLAGFVIATKHRFVASNSKDDLAKETASFTLHVITINHPGQIGNNYALVLDFHTSKIAFKSFGLKSSSSCIVTAMAAYKVKLIGPDRIENEFEAPDDVYILDAAENAGVELSYSCRVGACFTRAGSVHQSDGSFPNDNQLKEGFLLTCVSNPTSGYVIETNTSVSTSSLVIMATISTVKFSPQCMFKTASRNQSAVAKGWLPLVIGVILYVGLNFVVYKALKDWLIKSKPFGLVQDSKLSITIRLACGVATNTPFPIPWELVVLALKAMILLILHAPKFGKVFEDSNFKICKGYNTDNIGLVCNWPFEDVLAHYCLSHADTFKSKKVIELGFGFGLAGFVIATKLRFVASNSKDDLAKEVATFTSQVITINHPGQIGNDYALVLDCHTSQIAFKFSELLTKIVRRSGVLQKEPKFLKNGDAWKVKMVPTMPMVVENFSWFSCFQVGIG.	612

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca2g03297	611	Gene3D	-	238	332	IPR012675	-
	Seca2g03297	611	NCBIfam	ferredoxin [2Fe-2S]	239	324	IPR010241	GO:0009055\|GO:0022900\|GO:0051537
	Seca2g03297	611	SUPERFAMILY	2Fe-2S ferredoxin-like	11	67	IPR036010	GO:0051536
	Seca2g03297	611	PANTHER	ELONGATION FACTOR 1 ALPHA	173	224	-	-
	Seca2g03297	611	FunFam	Elongation factor 1-alpha	521	608	-	-
	Seca2g03297	611	ProSiteProfiles	2Fe-2S ferredoxin-type iron-sulfur binding domain profile.	241	327	IPR001041	GO:0051536
	Seca2g03297	611	SUPERFAMILY	2Fe-2S ferredoxin-like	235	323	IPR036010	GO:0051536
	Seca2g03297	611	CDD	fer2	9	68	IPR001041	GO:0051536
	Seca2g03297	611	SUPERFAMILY	EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain	188	225	IPR009001	-
	Seca2g03297	611	Gene3D	-	1	81	IPR012675	-
	Seca2g03297	611	Gene3D	Translation factors	521	609	-	-
	Seca2g03297	611	Pfam	Elongation factor Tu C-terminal domain	187	229	IPR004160	-
	Seca2g03297	611	Pfam	Elongation factor Tu C-terminal domain	521	604	IPR004160	-
	Seca2g03297	611	Pfam	2Fe-2S iron-sulfur cluster binding domain	250	315	IPR001041	GO:0051536
	Seca2g03297	611	Pfam	2Fe-2S iron-sulfur cluster binding domain	13	54	IPR001041	GO:0051536
	Seca2g03297	611	SUPERFAMILY	EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain	524	603	IPR009001	-
	Seca2g03297	611	CDD	fer2	243	322	IPR001041	GO:0051536

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca2g03297	Seca-Chr2	100796658	100801833	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Seca2g03297	507	603	Eukaryotic Initiation Factors Gene Family	AT5G60390	73.469	4.72e-37	142

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca2g03297	K03231		K02639	gmx:100785611	151.754