Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g03295 ATGGAATCCGTTAATGGCAATGGAGATCCTGTTGTCAATGAGACGAGCAATAATGATACACATGTTGGTGATTCAGAGGATAAAGGTCGTCAAGAACCGTTCATTGGAATGGAATTTGAGTTGCGGGAAGATGCTTATTCATTCTACACTCGTTATGCTAAATGTGTTGGATTTGGCGTGTCTATTAAAACAAGTCGCCGTTCAAAAAGTTCTAGAGAATTCATTGATGTGAAATATGCTTGCACAAGATATGGGAAGAAACGAGAATCCACGACACTTAATCCACGTCCTTGTTTCAAGGTCGAATGTGAGGCTAGTTTGCGTATTAAAAGGAGTTGTAATGGAAAATGGATTGTTCACAACTTCATCAAAGATCAAAATCATGAGCTTTTTCCGGCATATGCACATTATTTTCCTTGTCACAGAGGCATCAATCAAGCTCAAAAGGAATGCATTGAAACTTTGCAACATGTTGGAGTGAGAACAAGTAAAATTTACGCCACGATGGCCAAACAACATGGAGGATATGAAAACATTGGCTGCTTGGAGAAAGATATTAGAAATCATTTGGATAAGGATCGTCGTTTGGCTTTAGAATCAGGAGATGCAAATGCAATGCTGGAATGTTTTATGCTCATGCAAGAAGAAAATCCAAGATTCTTTTATGCAATTGATTTGGATGATGAAGATCGTGTGAAAAATATATTTTGGGTGGATGCAAAAGGTAGAGATGACTATGAAGAGTTTGGAGATGTAATTTCATTTGATACAACATACATCACAAATAAGTATAAAATGCCATTTGCTCCATTCATTGGGGTGAATAATCACTTTCAGTCAAGATTACTTGGTTGTGCATTACTAGCAGATGAGTCTTCAAAAACTTTCACATGGTTGATGAAAACCTGGCTTAGAGCTATGGGTGGCAAGCCTCCCAATGCAATAATTACAGATCAAGATAAAGCAATGAAATCAGCTATTAAAGAGTCTTGGTCAAAGAAGCAATTTGAAGATAAATGGCAGGAAATGGTTGAAAAATGTGAACTATCGGAGGATGGATGGATTCAATCTTTATTTGAAGAACGTGAGCATTGGGTTCCTGTTTACGTGAAGGATACATTTTTTGGTGGCATGTCAACAACTCAAAGATCGGAGAGCATCAACTCATTTTTTGACAAATATGTAAGTAAAAAAACTTCATTAAAGGAATTTGTTGAAAAATATAAAGTTGCTTTACAAGATGGAGAAGAGGCAGAAATGCAAGCTGATTTTAATACATGGCACAAGCAACCTGTTCTTAAGACTCCGTCACCTTTTGAGAAGCAAATGTCAATGATTTATACACATGAAGTATTCAAGAAATTCCAAGTTGAAGTTTTAGGATTACCCGGATGTCATTTTATGAAAAAGACTGAAAATGGTCAGATTACCACTTTTAAAATCCTAGACTTCCAAAAAGATGAAGAGTTTATTGTAGAGTGGGATGCATCAAAAGCAGAAATTTCTTGCTTGTGTCGTTTATTTGAGTATAATGGATATCTTTGTAGACATTCATTGATGGCACTCCAAGTTGTTGGTGTCTTGGTTGTCCCATCAAGCTGTATACTGAGAAGATGGACCAAAGATATTAGAAGCAAGCATATTAAAAGAAAAATGAACAACAATGCCTATACGAAAAAGGAGAGATATGATCACTTATATCAAAAGGCCTATGAATTGCTTGAGGAAGAATCATTGAGTAATGAGAGTTTTAATTTTGCAAGTCATGCTCTTGATGAGACCTTCAAACAATGTGCAAGCATTAACCAATCTTTGAAAATTGACAAAGAAAAGGTTGGTAAGAACATTTTACATGAGAAGCCATTACTTGATCCTATAGTTTCAAAAACAAAAAGGGCCCCAAGAAGAATAAAGAGTGGGATTGAGAAAGGTCGTAAGAGAACATCAAGTGGTAAAGTGAAAAGGTTTGGTTTTGTTGAAAAAGAAGCAATGAATACACCTGGTGTTCTTAATGATGAAGTGGTGGCTGCATCAATAAGAATGGAAGCACCTGGATTGATGAAAGAAAGTTATTCAGATCATGTTTCACCCATACTTCAAGGTGATAACTCAAGAACAAGATGA 2124 0.3611 MESVNGNGDPVVNETSNNDTHVGDSEDKGRQEPFIGMEFELREDAYSFYTRYAKCVGFGVSIKTSRRSKSSREFIDVKYACTRYGKKRESTTLNPRPCFKVECEASLRIKRSCNGKWIVHNFIKDQNHELFPAYAHYFPCHRGINQAQKECIETLQHVGVRTSKIYATMAKQHGGYENIGCLEKDIRNHLDKDRRLALESGDANAMLECFMLMQEENPRFFYAIDLDDEDRVKNIFWVDAKGRDDYEEFGDVISFDTTYITNKYKMPFAPFIGVNNHFQSRLLGCALLADESSKTFTWLMKTWLRAMGGKPPNAIITDQDKAMKSAIKESWSKKQFEDKWQEMVEKCELSEDGWIQSLFEEREHWVPVYVKDTFFGGMSTTQRSESINSFFDKYVSKKTSLKEFVEKYKVALQDGEEAEMQADFNTWHKQPVLKTPSPFEKQMSMIYTHEVFKKFQVEVLGLPGCHFMKKTENGQITTFKILDFQKDEEFIVEWDASKAEISCLCRLFEYNGYLCRHSLMALQVVGVLVVPSSCILRRWTKDIRSKHIKRKMNNNAYTKKERYDHLYQKAYELLEEESLSNESFNFASHALDETFKQCASINQSLKIDKEKVGKNILHEKPLLDPIVSKTKRAPRRIKSGIEKGRKRTSSGKVKRFGFVEKEAMNTPGVLNDEVVAASIRMEAPGLMKESYSDHVSPILQGDNSRTR. 708
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g03295 707 Pfam SWIM zinc finger 498 524 IPR007527 GO:0008270
Seca2g03295 707 Pfam MULE transposase domain 252 335 IPR018289 -
Seca2g03295 707 SMART 26again6 501 528 IPR006564 GO:0008270
Seca2g03295 707 ProSiteProfiles Zinc finger SWIM-type profile. 490 526 IPR007527 GO:0008270
Seca2g03295 707 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 15 599 IPR031052 GO:0006355
Seca2g03295 707 Pfam FAR1 DNA-binding domain 47 132 IPR004330 -
Seca2g03295 707 MobiDBLite consensus disorder prediction 1 30 - -
Seca2g03295 707 MobiDBLite consensus disorder prediction 1 19 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g03295 Seca-Chr2 100784490 100787311 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Seca2g03295 FAR1 2.4e-22 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g03295 - - mtr:112418473 1009.21