Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g03234 ATGGAGAATTATTCCATGTTGTTTCCTTGTCCTCCTTCTAATTCAAGTTACCCAATTTCAACAAGTGCTATAGTGGGAACCTCTCAGCATGCATTTCTGGGTTTAAGGGCTGATAGTAATGAAATTGGTGAGAATAGATCATCATCAGTTGCAGAAGGTTCTAGAGATGGCTTATTGTCTCAGATCAGTGGGAGCAATATTAATAATGTGACTTCTGATCCTCAACAACTAGGTGGTGGTTCAGGTAATAGTAGTAATAATAATAAAAAGAAAGGAGAGAAAAAAGTTAGAAAGCCTAGATATGCTTTTCAAACAAGGAGTCAGGTTGATATACTTGATGATGGTTATCGATGGAGGAAATATGGCCAAAAAGCTGTTAAGAACAACAAATTCCCAAGGAGCTACTATAGGTGCACACATCAAGGGTGCAATGTGAAGAAGCAAGTCCAACGCCTAACCAAAGACGAGGGGGTAGTAGTGACCACTTATGAGGGAGTGCACACTCACCCAATTGAGAAAACAACAGATAACTTTGAGCATATTTTGAGTCAGATGCAAATATACACTCCCTTTTGA 576 0.3906 MENYSMLFPCPPSNSSYPISTSAIVGTSQHAFLGLRADSNEIGENRSSSVAEGSRDGLLSQISGSNINNVTSDPQQLGGGSGNSSNNNKKKGEKKVRKPRYAFQTRSQVDILDDGYRWRKYGQKAVKNNKFPRSYYRCTHQGCNVKKQVQRLTKDEGVVVTTYEGVHTHPIEKTTDNFEHILSQMQIYTPF. 192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g03234 191 MobiDBLite consensus disorder prediction 61 87 - -
Seca2g03234 191 FunFam WRKY transcription factor 57 98 172 - -
Seca2g03234 191 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 45 174 IPR044810 GO:0003700
Seca2g03234 191 Pfam WRKY DNA -binding domain 113 170 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca2g03234 191 ProSiteProfiles WRKY domain profile. 107 172 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca2g03234 191 MobiDBLite consensus disorder prediction 61 100 - -
Seca2g03234 191 Gene3D WRKY domain 97 171 IPR036576 GO:0003700|GO:0006355|GO:0043565
Seca2g03234 191 SMART WRKY_cls 112 171 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca2g03234 191 SUPERFAMILY WRKY DNA-binding domain 104 171 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g03234 Seca-Chr2 97913014 97915951 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g03234 100 191 WRKY Transcription Factor Family AT5G13080 88.043 5.30e-59 179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Seca2g03234 WRKY 1.8e-26 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g03234 - - pvu:PHAVU_001G088200g 267.314