Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g03208 ATGTCCAGCAACACCGTCAACTGTTCCAACTGCCGCACGTCTCTGCAGCTGCCACCTGGCGCTGCATGTGTCCGCTGCGCACTCTGCCATGCTGTCACTCTCACGGCAAACACATGGGCCGCTCAGCCCTACGCTCTCCCATCCCCCTACGCCCCACCACCGAACACCTATGGCCGCAAGAAGGCGGTGATCGTCGGCATCTCGTACCGGCACTCTCCGTACGAGATCAAGGGAAGCATCGACTTGGCCAAGTGGATGCGCTCCATTCTCATCGACAAGTTCCATTTTCCCCCATATTCCATCTTCATGCTCACTGGTTTTCTCTCGGCACTACGCTCACACCAAATCCAAAACTTATATACCATTGTGATCTTTTTCCTCTAG 384 0.5521 MSSNTVNCSNCRTSLQLPPGAACVRCALCHAVTLTANTWAAQPYALPSPYAPPPNTYGRKKAVIVGISYRHSPYEIKGSIDLAKWMRSILIDKFHFPPYSIFMLTGFLSALRSHQIQNLYTIVIFFL. 128
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g03208 127 NCBIfam zinc finger domain, LSD1 subclass 6 34 IPR005735 -
Seca2g03208 127 Gene3D - 21 114 - -
Seca2g03208 127 Pfam LSD1 zinc finger 8 32 IPR005735 -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-LSD Seca2g03208 zf-LSD1 4.3e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g03208 K22684 - gmx:100788737 118.627