Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g03199 ATGGAAGTGGAAAAACCGAATCTGCAATTAGCCTTTCCCTTCTGGAAACCCCTTCCTCGTAGGTTCCCTCCCGATTCTCCTTTCTTCGCTTCCGGCAACCTCGAACGAGAACTTCTTGCTAAACAGGTTTTCCTTTTCTTTCATTTTCATAAATTCAAATTGTTTGGTGTTCAGTGCTTGAAGGTTGCCTTGGAATTAACAGAAGAGAAGCAACAGCTTGAAATTTGGATACATGAGGAAGGAAGGGAGGTCTTCTGTCCCATTGTCAGTTGTGGAGCTCGCTTGACTTCAGTGGAGGACTTTGAAAATCACTATAATGCAAGGCATACTGCATCATGTTCTGTGTGTTCCAGGGTCTACCCAACATCACGCCTGCTCAGCATACATGTATCTGAAGCGCATGATTCTTTCTTTCAGGCAAAAGTTGCGCGTGGCTATGATATGTATGAATGCTTAGTGGAAGGTTGTGGTATGAAATTCAAAAGCTACAATAGTAGGCAGCAGCATCTAGCTGATAAGCATAAATTTCCCACCTCATTTGAGTTTTTCAAGAAGTCTCGGCCTTCAAAGAAACAGAGGCTGAAGTCTCAACGCAAACAAGCTGCCCATAAGAAGGATGCATCAGCAATGATGGAAGTGGAAAATGCAGCCATAGATGACCTTGTTTCAGCAGTCTCTAAATTGAATACTTCAGACTCCACTCCTTCCTCTATCAGCTTTGGTCGCCGCCACAAAGGTTTGTCATTTATCCCTCGAGCTGTTCAGCATGGAAGGGGATCAAACTCAGCATCGTCGATTACAAAGAGATAA 810 0.437 MEVEKPNLQLAFPFWKPLPRRFPPDSPFFASGNLERELLAKQVFLFFHFHKFKLFGVQCLKVALELTEEKQQLEIWIHEEGREVFCPIVSCGARLTSVEDFENHYNARHTASCSVCSRVYPTSRLLSIHVSEAHDSFFQAKVARGYDMYECLVEGCGMKFKSYNSRQQHLADKHKFPTSFEFFKKSRPSKKQRLKSQRKQAAHKKDASAMMEVENAAIDDLVSAVSKLNTSDSTPSSISFGRRHKGLSFIPRAVQHGRGSNSASSITKR. 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g03199 269 MobiDBLite consensus disorder prediction 187 209 - -
Seca2g03199 269 ProSitePatterns Zinc finger C2H2 type domain signature. 113 134 IPR013087 -
Seca2g03199 269 ProSitePatterns Zinc finger C2H2 type domain signature. 151 174 IPR013087 -
Seca2g03199 269 PANTHER UNCHARACTERIZED 9 257 IPR039258 -
Seca2g03199 269 SMART c2h2final6 111 134 IPR013087 -
Seca2g03199 269 SMART c2h2final6 84 109 IPR013087 -
Seca2g03199 269 SMART c2h2final6 149 174 IPR013087 -
Seca2g03199 269 MobiDBLite consensus disorder prediction 249 269 - -
Seca2g03199 269 ProSitePatterns Zinc finger C2H2 type domain signature. 86 109 IPR013087 -
Seca2g03199 269 MobiDBLite consensus disorder prediction 255 269 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g03199 Seca-Chr2 96964361 96966228 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g03199 9 265 C2H2 Transcription Factor Family AT5G14140 59.023 1.66e-108 313
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Seca2g03199 None None None