Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g03153 ATGGAAGAGGATTCTAGGAAATTTGGAGAAAGTAACAACAAAATGGAAGAAGTAGTTGAAAGAGAAGAAGAAATAGACCCAGAAAGCAATCAACTGAATCAGCCACTGCTGAAGAGGAATAGGACACTGTCTTCAAATCCACTTGCTCTGGTTGGAGAAAAAGTTTCCTACATAGAAAGCTTGGACTATGAGATAAATGAGAATGATCTGTTCAAGCATAATTGGAGGACCAGATCAAGAGTTGAAGTATTGCAATACATATTCTTGAAATGGACACTGGCATTCCTTGTTGGATTTCTCACTGGTATTATAGCAACTCTCATCAATCTTGCTGTTGAGAACATTGCAGGGTACAAGCTTCTAGCTGTTCTTAAATACATCCACAGAGAAAGGTACTTGATGGGTTTCCTATATTTCACGGGCATTAATTGTGTTTTAACATTAGTTGCTGCTGTTCTGTGTGTGTGTTTTGCACCCACAGCAGCTGGACCTGGAATACCTGAAATCAAAGCTTATCTTAATGGTGTTGATACGCCCAATATGTATGGTGCTACAACATTGATAGTCAAGATAATTGGAAGCATTGGAGCTGTCTCTGCAGGCTTAGATCTAGGAAAAGAAGGACCCTTGGTACATATAGGAAGCTGCATTGCTTCCTTACTAGGACAGGGAGGCCCTGACAATCACAGGATCAAATGGCGATGGCTTCGATATTTTAACAATGATCGTGACCGTCGAGATCTTATTACCTGTGGTGCATCTTCTGGAGTTTGTGCAGCTTTCCGGGCACCTGTGGGTGGAGTTCTCTTTGCTCTTGAAGAGGTGGCAACTTGGTGGAGAAGTGCTCTCCTATGGAGAACATTTTTTAGCACAGCTGTGGTGGTGGTGGTGCTCAGGGCTTTCATTGAAATCTGCAACTCTGGGAAATGTGGTCTTTTTGGTACAGGAGGGCTGATCATGTTTGATGTGAGCAATGTCACTGTTAGGTACCATGTGATGGATATCATCCCTGTGGTAGTCATTGGAATCATTGGCGGGGTATTGGGAAGCCTTTATAATCATCTTCTGCACAAGGTTCTCAGACTCTACAATCTCATCAACCAGAAAGGAAAAATACATAAACTCCTCCTCAGTCTTGCAGTTGTACTCTTCACGTCAGCATGTCAATATGGTCTCCCATTCCTAGCAAAATGCACCCCTTGTGATTCATTGCTTCCAGAGTCAAAGTCTGTCTGTCCAACCAATGGAAGGTCTGGAAATTTCAAACAATTCAATTGCCCACCTGGCTACTACAATGATCTTGCTACTCTGCTGCTTACCACTATTGATGATTCTGTTCGAAACATATTCTCAACCAACACTCCTCACGAATATCAACCCTCCTCCCTCCTAATTTTCTTTGCACTCTACTGCATATTAGGACTGTTCACTTTTGGAATTGCTGTGCCATCTGGGCTCTTCCTCCCAATCATCCTTATGGGCTCAGCTTATGGCCGCCTTCTTGGCATGTTCATGGGACCTCATACAAACATTGACCAAGGGTTGTTTGCAGTACTTGGTGCAGCCTCCCTCATGGCTGGTTCCATGAGAATGACTGTATCCCTTTGTGTGATCTTCCTTGAGCTCACCAGCAACCTTCTCCTGCTACCAATAACGATGATTGTTCTCCTAATAGCTAAAACTGTTGGAGATTGTTTCAACCCAAGCATCTATGAAATTATACTGCACTTGAAAGGCCTTCCTTTCATGGATGCAAATCCTGAGCCATGGATGAGAAATCTCACTGTGGGTGAACTCGTTGATGTAAAGCCAGCTGTGGTTTCCCTCCATGGAGTAGAAAAGGTAGCCAATATAGTAAATGTCTTGAAAAACACTACACATAATGGTTTCCCTGTGATGGATGATGGGGTGGTACCACCGGTAGGACAGGCCAATGAGGCAACAGAATTGCACGGACTAATTCTAAGAGCACACCTCATCCAAGCATTAAAGAAGAAGTGGTTCTTGAAAGAGAGAAGGAGAACAGAGGAATGGGAAGTGAGAGAGAAATTTACCTGGGTAGAGCTGGCTGAGAGAGAAGCGTTTGAAGAGGTGGCTATAACAAGTGAGGAAATGGAGATGTTTGTTGATCTACATCCTCTCACCAATACAACTCCCTTTACAGTGCTAGAGAGCATATCAGTAGCAAAAGCAATGGTCCTCTTCAGGCAAGTTGGACTTCGCCATCTGCTTGTAGTACCCAAGTATCAGGCATCGGGGGTATCCCCTGTAATTGGGATCTTGACCAGACAGGATCTACTGGCCCACAACATTCTGACAGTCTTTCCTCACCTGGCAAAATCTAAGGGCAGAGAAAAGAGAAATTGA 2367 0.4368 MEEDSRKFGESNNKMEEVVEREEEIDPESNQLNQPLLKRNRTLSSNPLALVGEKVSYIESLDYEINENDLFKHNWRTRSRVEVLQYIFLKWTLAFLVGFLTGIIATLINLAVENIAGYKLLAVLKYIHRERYLMGFLYFTGINCVLTLVAAVLCVCFAPTAAGPGIPEIKAYLNGVDTPNMYGATTLIVKIIGSIGAVSAGLDLGKEGPLVHIGSCIASLLGQGGPDNHRIKWRWLRYFNNDRDRRDLITCGASSGVCAAFRAPVGGVLFALEEVATWWRSALLWRTFFSTAVVVVVLRAFIEICNSGKCGLFGTGGLIMFDVSNVTVRYHVMDIIPVVVIGIIGGVLGSLYNHLLHKVLRLYNLINQKGKIHKLLLSLAVVLFTSACQYGLPFLAKCTPCDSLLPESKSVCPTNGRSGNFKQFNCPPGYYNDLATLLLTTIDDSVRNIFSTNTPHEYQPSSLLIFFALYCILGLFTFGIAVPSGLFLPIILMGSAYGRLLGMFMGPHTNIDQGLFAVLGAASLMAGSMRMTVSLCVIFLELTSNLLLLPITMIVLLIAKTVGDCFNPSIYEIILHLKGLPFMDANPEPWMRNLTVGELVDVKPAVVSLHGVEKVANIVNVLKNTTHNGFPVMDDGVVPPVGQANEATELHGLILRAHLIQALKKKWFLKERRRTEEWEVREKFTWVELAEREAFEEVAITSEEMEMFVDLHPLTNTTPFTVLESISVAKAMVLFRQVGLRHLLVVPKYQASGVSPVIGILTRQDLLAHNILTVFPHLAKSKGREKRN. 789
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g03153 788 PRINTS Chloride channel signature 514 530 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Seca2g03153 788 PRINTS Chloride channel signature 482 502 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Seca2g03153 788 PRINTS Chloride channel signature 532 551 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Seca2g03153 788 PRINTS Chloride channel signature 190 209 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Seca2g03153 788 PRINTS Chloride channel signature 254 273 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Seca2g03153 788 PRINTS Chloride channel signature 570 584 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Seca2g03153 788 PRINTS Chloride channel signature 159 176 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Seca2g03153 788 FunFam Chloride channel protein 584 770 - -
Seca2g03153 788 SUPERFAMILY Clc chloride channel 68 585 IPR014743 -
Seca2g03153 788 CDD CBS_pair_voltage-gated_CLC_euk_bac 603 769 - -
Seca2g03153 788 PANTHER CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER 15 773 - -
Seca2g03153 788 Pfam CBS domain 717 767 IPR000644 -
Seca2g03153 788 Pfam Voltage gated chloride channel 147 563 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Seca2g03153 788 ProSiteProfiles CBS domain profile. 715 781 IPR000644 -
Seca2g03153 788 CDD ClC_6_like 59 583 - -
Seca2g03153 788 Gene3D - 586 774 IPR046342 -
Seca2g03153 788 MobiDBLite consensus disorder prediction 1 31 - -
Seca2g03153 788 FunFam Chloride channel ClC3 82 402 - -
Seca2g03153 788 SUPERFAMILY CBS-domain pair 587 768 IPR046342 -
Seca2g03153 788 SMART cbs_1 718 771 IPR000644 -
Seca2g03153 788 SMART cbs_1 605 664 IPR000644 -
Seca2g03153 788 PRINTS Plant CLC chloride channel signature 64 72 IPR002251 GO:0005247|GO:0006821|GO:0016020
Seca2g03153 788 PRINTS Plant CLC chloride channel signature 275 283 IPR002251 GO:0005247|GO:0006821|GO:0016020
Seca2g03153 788 PRINTS Plant CLC chloride channel signature 289 299 IPR002251 GO:0005247|GO:0006821|GO:0016020
Seca2g03153 788 PRINTS Plant CLC chloride channel signature 434 450 IPR002251 GO:0005247|GO:0006821|GO:0016020
Seca2g03153 788 PRINTS Plant CLC chloride channel signature 307 314 IPR002251 GO:0005247|GO:0006821|GO:0016020
Seca2g03153 788 MobiDBLite consensus disorder prediction 1 28 - -
Seca2g03153 788 Gene3D Clc chloride channel 82 585 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g03153 Seca-Chr2 95258609 95263369 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g03153 1 783 Ion Channels AT3G27170 79.592 0.0 1262
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g03153 K05016 - gmx:100788620 1394.41
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca2g03153 2 95258609 95263369 Seca2g03153 2 95258609 95263369 ECH
Seca2g03153 2 95258609 95263369 Seca2g03153 2 95258609 95263369 PCT