Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g03139 ATGGGCACAGTAGAAATGATCATTAGGTTCCACATGAGAGCTTTGGTGTTATTCCTTTGGCTGTTTGTCCCCTCATTGGGTAAAGACCTGTTAAGCTGTGAGGCAACATCACCAGATGCCTCAGGCTACCCTTGCAATGAAAATGGGACACAAAGCTATTGTGGAACATTTGCACTCTTTCTCACAAATTCTTATTACTCTTCTCTATCCAACTTGACCTTGTACTTGGGACTCAACCGGTTTGTCATAGCAGAAACAAATGGTTTCTCTGCTGAAACTGAGTTCCTCTCACATGATCAGCCTCTTCTGATACCGATTGATTGTAAATGCAAAGGTGGATTCTTTCAGGCTGAATTAACAAAAACTAGCATCAAAGGAGAGAGCTTTTATGGTATTGCTCAAACATTGGAGGGCTTGACAACCTGCAAGGCTATCAGGAACAACAACCCAGGTGTGTCACCTTGGAATCTTGATGGTAAAGTCAGATTGTTTATCCCATTGAGATGTGCCTGCCCATTTTCATCTGAAGTTAGACAAGAACCAAGGCTTTTGCTTTCTTATCCTGTAAGCAGAGGTGATACTATTTCCAATTTAGCCTCAAAGTTTAATGTAACTCAAGAAGCTATTGTTTCTGCAAATAACATATCATCAGAAGGCCTTAGAGCAAGAAACCTTGCACCCTTTACCTCTATTCTGATTCCACTGAATGATAAACCTACCCTTGGTCCTCTGGCTAAACCCAAGGAACCCAATTCTGGTTTTCCAACAACCAGAATCCCAGTAAGTGGTCCAGACAAGAAGTCAACAATGTGGAAAACTGAATTGTACATTGCACTAGCTGGGGTTGCACTTGGAGTCTGCATTGCTTTAGTGGCTGTCTTTTTTGTGATCAGATTGAAGCAAAAGAAGGAGAAAGAGAATTCAGTAAAAGAAGGAGATATGGAGATGCAACATCTGAATCAAAGTATAAGAACCACCAGTGACAAGAAAGTCTCATTTGAGGGATCTCAGGATACTCTTGATGGGAAAATCATTGATGCCACACCTCGTAAGATGTTGCTGGAGACATACACTATTGAAGATGTGAGAAAAGCAACTGAAGATTTCAGTTCAAGCAGTCTTATTGAAGGATCAGTATTTTATGGTCGTCTAAATGGGAAGAACATGGCAATCAAAAGAACAAAGACAGAGATGCTTTCAAAGATAGATCTTAGCCTTTTCCATGATGCACTTCACAACCATCCCAACATACTTAGGCTACTAGGAACAAGCTTGTTAGAGGGGCCAGAGTCATTTTTGGTGTTTGAGTATGCTAAAAATGGTTCATTGAAAGATTGGCTTCATGGTGGCTTGGCCATCAAGAACCAGTTCATTGCTTCCTGCTATTGTTTCCTTAATTGGAGCCAGAGGCTCAGAATCTGTCTTGATGTGGCCAGTGCCTTGCAGTACATGCACCATGTTATGAATCCAAGCTATGTGCATAGAAATGTGAAGAGCAGGAACATATTTTTGGATGAAGAATTTGGTGCCAAGATAGGTAATTTTGGGATGGCAGGGTGTGTTGAGAATGACACTGAGGATCCACATTTCTATTCCACCAACCCTGCCTCTTGGAGTCTTGGTTATTTGGCTCCAGAATATGTGCACCAAGGTATAATTTCCCCAAGCATTGATATTTTTGCTTATGGGGTGGTTTTGTTGGAAGTTTTGTCTGGTCAAACTCCTATAAGCAGGCCTAATGATAAGGGTGAAGGAAGCATTTGGCTCACAGATAAAATCAAGACCATTTTGATGTCAGAAAATGTGAGTGAACTAAGGGAGTGGATAGACAGTGCATTAGGGGAGAACTACTCATTTGATGCAGCTGTGACAGTGGCCAATATTGCAAGAGCTTGTGTGGAGGAAGATTCTTCTTTGAGGCCAAGTGCAAGGGAAATTGTTGAGAAGCTATCAAGATTGGTGGAAGAATTACCAGAAGGGGAACAGAACATGATAATGAGTGAAAGCAGTAGCAAACCTCTTGTAGAAGCAATAGTAAGCAATCTGTGA 2049 0.4139 MGTVEMIIRFHMRALVLFLWLFVPSLGKDLLSCEATSPDASGYPCNENGTQSYCGTFALFLTNSYYSSLSNLTLYLGLNRFVIAETNGFSAETEFLSHDQPLLIPIDCKCKGGFFQAELTKTSIKGESFYGIAQTLEGLTTCKAIRNNNPGVSPWNLDGKVRLFIPLRCACPFSSEVRQEPRLLLSYPVSRGDTISNLASKFNVTQEAIVSANNISSEGLRARNLAPFTSILIPLNDKPTLGPLAKPKEPNSGFPTTRIPVSGPDKKSTMWKTELYIALAGVALGVCIALVAVFFVIRLKQKKEKENSVKEGDMEMQHLNQSIRTTSDKKVSFEGSQDTLDGKIIDATPRKMLLETYTIEDVRKATEDFSSSSLIEGSVFYGRLNGKNMAIKRTKTEMLSKIDLSLFHDALHNHPNILRLLGTSLLEGPESFLVFEYAKNGSLKDWLHGGLAIKNQFIASCYCFLNWSQRLRICLDVASALQYMHHVMNPSYVHRNVKSRNIFLDEEFGAKIGNFGMAGCVENDTEDPHFYSTNPASWSLGYLAPEYVHQGIISPSIDIFAYGVVLLEVLSGQTPISRPNDKGEGSIWLTDKIKTILMSENVSELREWIDSALGENYSFDAAVTVANIARACVEEDSSLRPSAREIVEKLSRLVEELPEGEQNMIMSESSSKPLVEAIVSNL. 683
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g03139 682 ProSiteProfiles LysM domain profile. 185 233 IPR018392 -
Seca2g03139 682 Pfam LysM domain 187 234 IPR018392 -
Seca2g03139 682 SUPERFAMILY Protein kinase-like (PK-like) 352 650 IPR011009 -
Seca2g03139 682 MobiDBLite consensus disorder prediction 242 261 - -
Seca2g03139 682 ProSiteProfiles Protein kinase domain profile. 365 653 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca2g03139 682 SUPERFAMILY LysM domain 186 221 IPR036779 -
Seca2g03139 682 PANTHER LYSM-DOMAIN RECEPTOR-LIKE KINASE-RELATED 34 657 - -
Seca2g03139 682 Gene3D Transferase(Phosphotransferase) domain 1 438 672 - -
Seca2g03139 682 Gene3D LysM domain 185 234 IPR036779 -
Seca2g03139 682 CDD LysM 186 217 IPR018392 -
Seca2g03139 682 FunFam PTI1-like tyrosine-protein kinase 3 438 664 - -
Seca2g03139 682 Pfam Protein kinase domain 378 648 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca2g03139 682 SMART LysM_2 186 234 IPR018392 -
Seca2g03139 682 Gene3D Phosphorylase Kinase; domain 1 345 437 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g03139 Seca-Chr2 94225951 94227999 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g03139 42 676 LysM Receptor-like Kinase (LYKs) Gene Family AT3G01840 40.752 7.92e-152 453
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Seca2g03139 Pkinase 4e-30 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g03139 - - gmx:100816082 1150.96