Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g03131 ATGTACAATGCTGAGAAACGGGGAAAGCGCCAAGTCATGATCAGGCCATCTTCCAAAGTCATTATCAAATTCCTTTTGGTGATGCAGAAGCATGGATACATTGGAGAATTTGAGTATGTTGATGACCACAGGGCTGGCAAAATTGTGGTTAAATTGAACGGTAGGCTGAATAAGTGTGGGGTTATTAGTCCCCGTTTCGATGTGGGTGTCAAAGAGATTGAAGGTTGGACTGCTAGGCTTCTCCCCTCAAGACAGTTTGGGTATATTGTATTGACTACCTCTGCCGGCATCATGGACCATGAAGAGGCTAGGAGGAAGAATGTTGGTGGTAAGGTCCTGGGCTTCTTCTACTAG 354 0.4548 MYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVKLNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY. 118
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g03131 117 Pfam Ribosomal protein S8 2 117 IPR000630 GO:0003735|GO:0005840|GO:0006412
Seca2g03131 117 PANTHER 40S RIBOSOMAL PROTEIN S15A 1 116 IPR000630 GO:0003735|GO:0005840|GO:0006412
Seca2g03131 117 FunFam 40S ribosomal protein S15a 57 117 - -
Seca2g03131 117 Gene3D - 57 117 - -
Seca2g03131 117 ProSitePatterns Ribosomal protein S8 signature. 87 104 IPR000630 GO:0003735|GO:0005840|GO:0006412
Seca2g03131 117 Gene3D - 1 56 - -
Seca2g03131 117 FunFam 40S ribosomal protein S15a 1 56 - -
Seca2g03131 117 SUPERFAMILY Ribosomal protein S8 2 117 IPR035987 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g03131 Seca-Chr2 94026047 94028099 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g03131 1 117 Cytoplasmic Ribosomal Protein Gene Family AT5G59850 97.436 1.48e-83 238
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g03131 K02957 - tcc:18590745 237.269