Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g03126 ATGACCAAAGTTAGTTCAATGAGATATTTTTACTTCTATGTTGTGGTTCTTTCCTGGTTTTGGTCCATCCCTTGTACCCATGAACTACAAATTGCTCAGACCCAAGTCTTGTTACAGATAAGGAAGTATCTGGAGTACCCTACCTCTTTGCAAAATTGGGAAAATTACAATGGGGACCTTTGTAGCATTTCTCCCTCTTCACATATGAGCATTAAGTGTCAGGGTAATTCAGTAACTGAGCTTAAAATTATGGGAGATAAATCTGTGAAGGTTAACAAGTTCAATGGACTTGCAGTTCCCAATCAGACACTATCCATGAGCTTCTCTATTGATTCTTTTGTCACCACATTGACCAGGTTAACCAGCTTAAGGGTTCTCAGTTTGGTGTCCTTGGGAATTTGGGGGCCACTCCCTGATAAGATTCATCGGTTATCTTTGCTTGAAGTTTTGGATTTGAGCTCAAATTTCTTATTTGGTTCTATCCCACCAAGAATAGCTACAATGGTAAAGCTTCATACACTGACACTTGATGGCAATTATTTTAATAGCACCATGCCTAATTGGTTTGATTCATTGTCTAATCTAAATGTCTTGAGTTTGAAAAGCAACCACTTAAAGGGTTCATTCCCCTCTTCACTATGCAAAATTAAGAGCCTTACTGATATTTCTTTATCTCACAATGAGCTGTCTGGTGGATTGCCTGATCTTACTGCTCTCTCTGGCCTACATGTACTTGATTTAAGAGAAAATCATTTAGATTCTGAACTACCATTGATGCCCAAAACAGTAGTAACAATTCTGCTGAGTGAAAATTCATTCTCAGGTGAGATACCTAGTCAGTTTGGTGAATTGGGTCAGCTTCAACATCTAGATCTTTCATCAAATCATCTCAGTAGGATGCCCCCATCTGCTTTGTTCTCTTTGCCAAACATTAGCTATTTGAATTTAGCAAGCAATTTACTAAGTGGGTCCCTTCCACACAAATTAAAATGTGGCAGCAAACTTGGGTTTGTGGATATCTCTAGTAACAAGTTAAATGGTGTGCTTCCTTCTTGCTTGAGCAGTACATCTGATAGAAGAGTTGTAAGATATGGTGGAAACTGTTTATCTGCTGACTCTCAAGCTCAGAAGCGAGGGTCTTATTGTAAAGAATCCAGTTCTGAGAGGATGAAATTCTGGAGATGGAAAATAGCTGCAGCAGTTGCCACCATTATTGTAGTTGTTCTTGTACTCTCAGCTTTTGGAGTTTTCTTTTATAGACAATATCATTCAAGGGAGACATATAGGCATGAGATGTTGCCAAAGATTGTTCAAGATAACTCAACAACAGGGGTTTCCTCTGAAATCCTTGCTAGTGCCAGATTCATTTCTCAAACAGTGAAGCTAGGGACTCAAGCTACTCCAACTTGTCGACAGTTTCCAATTGAAGAGTTGAAGGAAATCACAAGAAACTTTGATTTGTCAACTTATATTGGTGAAGGATCCATTGGAAAGCTGTACAAAGGAAAACTAGAGAATGGATCTTACATTGTGATACGATCTCTGGCTCTGAAAAAGAAATTCTCACTACAAAATCTTAAAGCTCGGTTGGATTTACTCTCAAAGCTTCACCATCCAAATTTGGTTAGCCTCTTGGGTCATTGTATTGATGGTGGTGGACAAGATGATATTAGTACCCCCAAACTTCATCTTGTATATGAGTATGTACCAAATGGGAATTATCGTGCACATCTGTCAGAATTTTCATCAGAAAGGGCTCTAAAATGGTCTGATAGATTGGCAATTTTAATTGGAGTTGCCAAGGCAGTGCACTTTTTACATACTGGAGTTATACCAGGTTGTTTTAGAAACCAATTAAAGACAAACAATGTTTTACTTGATGAACATCATATTCCCAAGCTAAGTGACTATGGTATGTCCATGATTGCTGAAGAGATTGAAAACCCTGAGGCAAAGAGAGAGAATCCAAAATCATGCCAAAGGGAAGAATTAGAGGATGATGTCTATAATTTCGGATTTATATTGTTTGAATCACTTGCTGGACCCATAGCAAGCGAGAAAGGAGAAGCATTTTTCCTTGATGAAAAGGCATCCTTTGGCAGTCAAGATGGTAGGAAAAAAATTGTAGATCCAGTAGTGTTGACTACTTGTTGTCAAGAGTCATTATCAATTGCAATATCTATCACAACCAAATGCATATCTCCAGAATCCTCATCTCGTCCCTCTTTTGAGGATGTGCTATGGAATTTACAATATGCAGCTCAAGTCCAAGCCACAGCAGATGCAGATTCTACATGCTAG 2301 0.3859 MTKVSSMRYFYFYVVVLSWFWSIPCTHELQIAQTQVLLQIRKYLEYPTSLQNWENYNGDLCSISPSSHMSIKCQGNSVTELKIMGDKSVKVNKFNGLAVPNQTLSMSFSIDSFVTTLTRLTSLRVLSLVSLGIWGPLPDKIHRLSLLEVLDLSSNFLFGSIPPRIATMVKLHTLTLDGNYFNSTMPNWFDSLSNLNVLSLKSNHLKGSFPSSLCKIKSLTDISLSHNELSGGLPDLTALSGLHVLDLRENHLDSELPLMPKTVVTILLSENSFSGEIPSQFGELGQLQHLDLSSNHLSRMPPSALFSLPNISYLNLASNLLSGSLPHKLKCGSKLGFVDISSNKLNGVLPSCLSSTSDRRVVRYGGNCLSADSQAQKRGSYCKESSSERMKFWRWKIAAAVATIIVVVLVLSAFGVFFYRQYHSRETYRHEMLPKIVQDNSTTGVSSEILASARFISQTVKLGTQATPTCRQFPIEELKEITRNFDLSTYIGEGSIGKLYKGKLENGSYIVIRSLALKKKFSLQNLKARLDLLSKLHHPNLVSLLGHCIDGGGQDDISTPKLHLVYEYVPNGNYRAHLSEFSSERALKWSDRLAILIGVAKAVHFLHTGVIPGCFRNQLKTNNVLLDEHHIPKLSDYGMSMIAEEIENPEAKRENPKSCQREELEDDVYNFGFILFESLAGPIASEKGEAFFLDEKASFGSQDGRKKIVDPVVLTTCCQESLSIAISITTKCISPESSSRPSFEDVLWNLQYAAQVQATADADSTC. 767
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g03126 766 FunFam Putative inactive leucine-rich repeat receptor-like protein kinase 30 261 - -
Seca2g03126 766 FunFam Putative inactive leucine-rich repeat receptor-like protein kinase 263 387 - -
Seca2g03126 766 Gene3D Ribonuclease Inhibitor 263 391 IPR032675 -
Seca2g03126 766 ProSiteProfiles Protein kinase domain profile. 485 753 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca2g03126 766 ProSiteProfiles Leucine-rich repeat profile. 286 307 IPR001611 GO:0005515
Seca2g03126 766 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 34 358 - -
Seca2g03126 766 FunFam Putative inactive leucine-rich repeat receptor-like protein kinase 448 568 - -
Seca2g03126 766 Pfam Leucine rich repeat 170 229 IPR001611 GO:0005515
Seca2g03126 766 Pfam Leucine rich repeat 264 321 IPR001611 GO:0005515
Seca2g03126 766 Pfam Protein tyrosine and serine/threonine kinase 487 747 IPR001245 GO:0004672|GO:0006468
Seca2g03126 766 Gene3D Transferase(Phosphotransferase) domain 1 569 765 - -
Seca2g03126 766 SUPERFAMILY Protein kinase-like (PK-like) 466 750 IPR011009 -
Seca2g03126 766 Gene3D Ribonuclease Inhibitor 31 262 IPR032675 -
Seca2g03126 766 FunFam Putative inactive leucine-rich repeat receptor-like protein kinase 569 766 - -
Seca2g03126 766 Gene3D Phosphorylase Kinase; domain 1 447 568 - -
Seca2g03126 766 SMART LRR_typ_2 168 191 IPR003591 -
Seca2g03126 766 SMART LRR_typ_2 284 307 IPR003591 -
Seca2g03126 766 SMART LRR_typ_2 192 216 IPR003591 -
Seca2g03126 766 SMART LRR_typ_2 239 262 IPR003591 -
Seca2g03126 766 SMART LRR_typ_2 144 167 IPR003591 -
Seca2g03126 766 SUPERFAMILY L domain-like 41 373 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g03126 Seca-Chr2 93936340 93940556 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g03126 14 698 Miscellaneous Gene Families AT5G14210 59.424 0.0 795
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VI-1 Seca2g03126 PK_Tyr_Ser-Thr 1.9e-19 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g03126 - - gmx:100813412 1259.97