Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g03112 ATGTTTTTGTGTGCCTTTGTAATTGCCACTTTACCTCATGCTGCATCCATAACTGCTGCTTCAGATGCTCTGTTGAAGTGGAAAGCCAGCCTTGACAAGCAAAGCCACGCTTTGCTCTCTTCATGGACCGCTACTAGTCCTCCTTGCAGTTGGGTGGGAGTTGAATGCGATGTCGCGTCAAAATCTATCAACAAGGTGAATCTTACAAATATTGGACTAAGAGGTACGCTTCAACGTCTCAATTTCTCATCACTTTATAACATCCGCACCATAGATTTGTCCATGAACAAACTATCTGGTACCATTCCCAATACCATTGGTAATTTGTCCAAACTCTCCTATCTTGATCTCAGTGACAATGATCTCTCTGGGACTATTCCATCTGAGATAACACATTTGGTTAGTCTTAATGCATTGTTCATGGGTGATAATGTTGTCAGTGGATCCCTCCCTCGAGAAATAGGATCGTTGGTCAATATATCATATCTTTGGTTACAGGACAACCAGCTATCTGGCAACATTCCTCGTGAAATTTGGAAGTTGGTCAACCTCAGGTATTTATATCTTGGAGGAAATAATCTTTCTGGCTCCATTCCTCGAGAAATTGGATTTCTCAAACAACTCGGTGAGCTTGATTTGTCTAAGAACTATCTCTCTGGCACTATCCCCACTACAATTGGAAACCTAAGCAATTTATACTATCTTTACCTTTATGCCAACTATCTCACTGGTGGCATTCCACTTGAAGTCGGAAAACTCTATTCTCTTGTCACAATCCAATTGTCAGGGAACAACCTCGCTGGGCCAATCCCACCATCCATAGGAAATTTGACAAAAGTCAGTGTCTTATCCTTATACACAAACGAACTCACTGGGCCAATCCCACCTTCCATAGGCAACTTGGTCAATTTGGATACTGTTCTCCTTCATGAAAACAAACTCTCTGGAGCTATTCCTCCCACCATCGGAAATTTGACAAAGGTCACTGGATTATACTTATACACAAACAAACTCTCTGGAACTATCCCTTCATCTATTGGAAATTTGACAAAACTCAGTGACTTATCTTTAATGTTTAATGCACTAAGTGGAAACATTCAAATAGAAATGAACAAGCTCACAAATTTAGAAAATTTGCAGTTATCTGATAACAATTTCATAGGTCATTTACCTCAGAACATTTGTGTTAGTGGAAAGTTGACAAACTTCTCTGCTATGAATAACCACTTCACGGGTCCAGTTCCAAAGAGTTTGAAAAATTGCTCCAGCCTTAGAAGGGTGAGGCTTGAACAGAACCAATTGACTGGAAATATAACAGATGCCTTTGGTGTATATCCAAATTTGGACTACATTGAATTGAGTGGAAATAATTTTTATGGCCACCTTTCACCAAATTGGGGATTGTGCACAAACCTCACAGCCCTTAAAATCTCCAACAATAATTTATCAGGTGGTATACCCCCAGAACTAGGTGAGGCAACCAAGTTACATGTACTTGACTTATCTTCCAACCATCTTACAGGAAAAATTCCTGAAGACCTGGTCAAGTTAACTTCATTGATCCAGCTTTACATAAACAACAATCATCTTTCAGGAAATATTCCAATACAAATAACAGCATTGCAGGAACTTGATACCTTGAACCTTGCAGCAAATAATTTAAGTGGCTTCATCCCAAAACAACTTGGAAGTTTCCCTAAGTTGTTGCACTTGAATATGAGCCAAAATATGTTTAAGGGAAATATTCCTGTTGACTTTGGCCAATTAAAAGTTCTTCAAAGTCTTGATCTCAGTGGGAATTCTTTAGGTGGATCAATACCAACAATGCTGGGACAACTGAAATACTTAGAAACGTTGAATCTCTCACATAATAATCTTTCTGGTGCTATTCCCTCCAGCTTTGTTGAGATGTTAAGCTTGACAACTGTTGATATATCATACAACCAACTAGAGGGTTCAATTCCAAGCATTCCAGCCTTCCAAAATGCTTCAATTGAAGAATTGAGAAATAACAAAGGCTTGTGTGGTAATGTCACTGGCCTTAAGCCTTGCTCAACATCAAGTGGCAAATCTCATGATCATAAGCTTCGCAAAATCATATTGATTGTTTTACCCGTTACTTTGGGAACTCTAATAGTAGCACTATTTGCTTTTGGGGTCTCATTTCATCTCTGTCTCACCTCAAGGAAAAAAGTGTTCAAGGCCACAAAATCGCAATCTCAAGATCTGTTTGCGATATGGAGTTTCGATGGTAAAATAGTGTATGAGAACATTATTGAAGCCACTGAACAATTTGATGGCAAACATCTCATTGGGGCTGGAGGACAAGGGTGTGTTTACAAGGCAAATTTGCCTACAGGTCAAGTTGTAGCTGTGAAGAAACTTCATTCACTACCAAATGGACAAATGTCTGATCTTAAAGCTTTCACAAGTGAGATCCAAGCTTTGACAGAGATCAAACATCGTAACATTGTAAAGCTTTATGGGTTTTCTTCACATTCACAACACTCATTTTTGGTTTATGAGTTCTTGGAGAAGGGTAGTCTTGAAAATATTTTAAAAGATGATGAACAAGCAACTCAATTTCATTGGGATAAGAGGGTTAATGTCATTAAAGATGTAGCAAATGCTTTATGCTATATGCATTATGAAATCTCACCTCCAATTGTTCATCGTGATATATCCAGCAAGAATGTTCTTTTGGATTTGGAATATGTGGCTCATGTCTCAGACTTTGGAACAGCTAAGCTTCTTAATTCTGATTCAACCAACTGGACCTCATTTGTAGGCACCTTTGGATATGCTGCTCCAGAACTTGCATATACAATGGAAGTAAATGAGAAATGTGATGTGTATAGTTTTGGAGTATTAGCAATGGAAATACTTTTTGGAAAGCACCCCGGAGATTTTATATCTTCTTCGTTGCAATCATCTTCATGGAGTATAGCGGGCTCAACACTTGATACTATGCCATTCCTAGATAAGTTGGACAACCGTCTCCCTCATCCAAAAAATCCTATTGTTAAGGAGGTGGTGTCAATGGCAAGGATTGCAATTGCTTGCTTAAATGAAAGCCCACGTTCTCGCCCTACAATGGAGCAGGTTTGCAAGAAGCTTGCAATGTCAAAGTCATCTTCAATGGATTATGCAGTCACAGATATATAG 3165 0.3893 MFLCAFVIATLPHAASITAASDALLKWKASLDKQSHALLSSWTATSPPCSWVGVECDVASKSINKVNLTNIGLRGTLQRLNFSSLYNIRTIDLSMNKLSGTIPNTIGNLSKLSYLDLSDNDLSGTIPSEITHLVSLNALFMGDNVVSGSLPREIGSLVNISYLWLQDNQLSGNIPREIWKLVNLRYLYLGGNNLSGSIPREIGFLKQLGELDLSKNYLSGTIPTTIGNLSNLYYLYLYANYLTGGIPLEVGKLYSLVTIQLSGNNLAGPIPPSIGNLTKVSVLSLYTNELTGPIPPSIGNLVNLDTVLLHENKLSGAIPPTIGNLTKVTGLYLYTNKLSGTIPSSIGNLTKLSDLSLMFNALSGNIQIEMNKLTNLENLQLSDNNFIGHLPQNICVSGKLTNFSAMNNHFTGPVPKSLKNCSSLRRVRLEQNQLTGNITDAFGVYPNLDYIELSGNNFYGHLSPNWGLCTNLTALKISNNNLSGGIPPELGEATKLHVLDLSSNHLTGKIPEDLVKLTSLIQLYINNNHLSGNIPIQITALQELDTLNLAANNLSGFIPKQLGSFPKLLHLNMSQNMFKGNIPVDFGQLKVLQSLDLSGNSLGGSIPTMLGQLKYLETLNLSHNNLSGAIPSSFVEMLSLTTVDISYNQLEGSIPSIPAFQNASIEELRNNKGLCGNVTGLKPCSTSSGKSHDHKLRKIILIVLPVTLGTLIVALFAFGVSFHLCLTSRKKVFKATKSQSQDLFAIWSFDGKIVYENIIEATEQFDGKHLIGAGGQGCVYKANLPTGQVVAVKKLHSLPNGQMSDLKAFTSEIQALTEIKHRNIVKLYGFSSHSQHSFLVYEFLEKGSLENILKDDEQATQFHWDKRVNVIKDVANALCYMHYEISPPIVHRDISSKNVLLDLEYVAHVSDFGTAKLLNSDSTNWTSFVGTFGYAAPELAYTMEVNEKCDVYSFGVLAMEILFGKHPGDFISSSLQSSSWSIAGSTLDTMPFLDKLDNRLPHPKNPIVKEVVSMARIAIACLNESPRSRPTMEQVCKKLAMSKSSSMDYAVTDI. 1055
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g03112 1054 Gene3D Ribonuclease Inhibitor 329 454 IPR032675 -
Seca2g03112 1054 Gene3D Ribonuclease Inhibitor 455 558 IPR032675 -
Seca2g03112 1054 ProSiteProfiles Leucine-rich repeat profile. 495 518 IPR001611 GO:0005515
Seca2g03112 1054 FunFam Nuclear pore complex protein NUP107 17 173 - -
Seca2g03112 1054 SUPERFAMILY L domain-like 21 314 - -
Seca2g03112 1054 Gene3D Ribonuclease Inhibitor 18 176 IPR032675 -
Seca2g03112 1054 Gene3D Ribonuclease Inhibitor 559 685 IPR032675 -
Seca2g03112 1054 PRINTS Leucine-rich repeat signature 112 125 - -
Seca2g03112 1054 PRINTS Leucine-rich repeat signature 613 626 - -
Seca2g03112 1054 Pfam Leucine rich repeat N-terminal domain 21 57 IPR013210 -
Seca2g03112 1054 PANTHER LEUCINE RICH REPEAT KINASE 2 61 329 - -
Seca2g03112 1054 Gene3D Transferase(Phosphotransferase) domain 1 844 1052 - -
Seca2g03112 1054 SMART LRR_sd22_2 181 196 - -
Seca2g03112 1054 SMART LRR_sd22_2 205 231 - -
Seca2g03112 1054 SMART LRR_sd22_2 325 351 - -
Seca2g03112 1054 SMART LRR_sd22_2 493 516 - -
Seca2g03112 1054 SMART LRR_sd22_2 157 176 - -
Seca2g03112 1054 SMART LRR_sd22_2 277 303 - -
Seca2g03112 1054 SMART LRR_sd22_2 109 132 - -
Seca2g03112 1054 SMART LRR_sd22_2 589 618 - -
Seca2g03112 1054 Pfam Leucine rich repeat 470 530 IPR001611 GO:0005515
Seca2g03112 1054 Pfam Leucine rich repeat 87 144 IPR001611 GO:0005515
Seca2g03112 1054 Pfam Leucine rich repeat 543 602 IPR001611 GO:0005515
Seca2g03112 1054 ProSiteProfiles Protein kinase domain profile. 765 1041 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca2g03112 1054 FunFam MDIS1-interacting receptor like kinase 2 844 1045 - -
Seca2g03112 1054 FunFam Probable leucine-rich repeat receptor-like protein kinase At5g63930 174 272 - -
Seca2g03112 1054 FunFam Uncharacterized protein 395 693 - -
Seca2g03112 1054 SMART LRR_typ_2 109 133 IPR003591 -
Seca2g03112 1054 SMART LRR_typ_2 589 613 IPR003591 -
Seca2g03112 1054 SMART LRR_typ_2 637 662 IPR003591 -
Seca2g03112 1054 SMART LRR_typ_2 253 277 IPR003591 -
Seca2g03112 1054 SMART LRR_typ_2 494 517 IPR003591 -
Seca2g03112 1054 SMART LRR_typ_2 301 325 IPR003591 -
Seca2g03112 1054 SMART LRR_typ_2 541 565 IPR003591 -
Seca2g03112 1054 SMART LRR_typ_2 373 397 IPR003591 -
Seca2g03112 1054 SMART LRR_typ_2 181 205 IPR003591 -
Seca2g03112 1054 Gene3D Ribonuclease Inhibitor 177 253 IPR032675 -
Seca2g03112 1054 Gene3D Ribonuclease Inhibitor 254 328 IPR032675 -
Seca2g03112 1054 Gene3D Phosphorylase Kinase; domain 1 726 843 - -
Seca2g03112 1054 SUPERFAMILY Protein kinase-like (PK-like) 745 1039 IPR011009 -
Seca2g03112 1054 Pfam Protein kinase domain 768 1038 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca2g03112 1054 FunFam MDIS1-interacting receptor like kinase 2 isoform A 292 394 - -
Seca2g03112 1054 Pfam Leucine Rich Repeat 616 635 IPR001611 GO:0005515
Seca2g03112 1054 Pfam Leucine Rich Repeat 183 205 IPR001611 GO:0005515
Seca2g03112 1054 FunFam Leucine-rich repeat receptor protein kinase MSP1 728 843 - -
Seca2g03112 1054 SUPERFAMILY RNI-like 371 660 - -
Seca2g03112 1054 ProSitePatterns Tyrosine protein kinases specific active-site signature. 889 901 IPR008266 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g03112 Seca-Chr2 93245431 93249398 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g03112 4 937 Receptor kinase-like Gene Family AT4G08850 46.089 0.0 774
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Seca2g03112 Pkinase 5e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g03112 - - gmx:100808316 1275