Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g03068 ATGCTCAAGATGAAAACCATGTCATTCTCTTGGATACAAGACATTTTTCATTTCAAGGGAATGAATTCTCCAATGTCAACTATTGTGTGCTTCTTTGTTCTGCAATTATTGGCATGGTCGAAGGTTAGTGCTAATGAAAGAAGAGGCCATTGCTTAATCACCCCACGGCCCATTATGAACATAGGTGCTGTGCTTGATTTGGGTTCAAAAATGGGTAAGCAGCAGAAGATAGCTATGGAAATTGCAGTCCAAGAGTTCAATCACTTGAGTTGTTCTAAGCTGGTTTTGAAGATAAAAAATTCCAAAGGGATATCAACTCAAGCAGTTGCTATAGATCTTGCACAGAACGAGGAGGTGATAGCAATCATAGGAACAATAACACACAACGAAGCAACTCTGGCAAGTGAAATTAATAAGAAGATAAAGAACATTCCTATCTTGTCTTTAACTTCACCTGCAGCCCCTAGAAGAGAACTATTATCTCCTCTATTGCCATACTTCATCCAAATGGGCAATGATATCAGCCTTCACATACAATGCATTGCAGCCATTGTAGGAGAGTTCAAATGGCAAAAGGTGACACCAATCTATGAACTTAATACTGGATTTTCCTCTGATCCAGGAATACTAATTGGTCTCTCCTATACCCTTCAACTTGTTGGTTCTGAGATTGATAGCTATTTAGCTTTGCCTCCCTTATCCACTCTGTCAGACCCAAAATCTATGATTGAACATAAGCTTAATAAGCTGAAAAGGAAGAGTAACAGGGTCTTCTTAATTGTCCAATCTTCTTTAGAGATGGCTAATATACTTTTTGAGAAAGCAAAGCAAATGGGTATGATGGAAAAAGGTTATGTGTGGGTTATCCCAGAGGGGGTTGCTGGCCTTCTTGATTCAGTTAACTCATCAGTTATCTTTAACATGCAAGGTGCTATTGGATTTAAAACACACCTCATGGAAATGAGTGAGACATTTAGACAGTTCAAATTCAAATTTAGAAGAAGGTTTGCATTAGAATACACTGAAGAAGAAAGCATTGACCCAAGTATCTTTGCAGTTCTATCATATGATGCAACTTGGACTATTGCTCAGGCTGCAAAGAAATTACAAGGAAGGTTCAGCCAGGAAGAATTTTCAGAAAAGATTCTGTCCAGTGATTTTGAGGGACTAAGTGGAAAGACTAGCTCCAGAAAAGGAAAATTACAGGAATCACCAACCTTCAGTATAATAAATGTGATAGGGAAAAGCTACATAGAGTTGGCATTTTGGTCTCATGTAGTTGGTTTTTCCAAGAACCTTGTGAGACATCAGCTAATGGAGATGACTGTAAATAATGATTCAACTGGAGTTATGGGTGTAGTTCATTGGCCTGGAGGCTTACTATCTGTTCCTAATGGATGGACTAATAGTAGTAATGAGGCAAGGTTAATGAAAATAGGAGTGCCTGCACAAGGTGCCTTTAACCAATTTGTCAATGTAACCTATGATCAGAGCAGGAATTCAACTTCCATCACTGGTTTTTCAATTGATGTCTTCAAAGCAGCTGTTAAACGTCTGCCATATCACTTGCCATATGTATTTGTTCCTTTCCATGGCTCTTATGATGAAATGGTTGAGAAAGTCCACAAAAAGGAATTTGATGCTGCTGTTGGAGATACAGAAATAATGGCATATAGATATCGCCTTGTAGAATTTACACAACCATATGTTGAATCTGGCCTTGATATGGTGGTTACTGAAGATAAATCAAAACAAACGTGGATGGTTTGGAAAGCCTTTAGAAAAGAGATGTGGTTGATGATGGTAGCAATGCATATTTTTGTGGGATTTGTTATTTGGTTTATTGAACGGGAAGTCAATGCAGAACTACAAGGGTTAGGGGCCATGCTTTGGTTTTTAGTTACAGTAATTTTCTATGCACACAGAGAACCAATAAGAAGCCCTGTGGCTCGAGCTGTGCTGGGACCATGGTTATTTGTGATCTTCATTATAACAACCAGTTTTGGATCAAGTTTAACAACCATGATGACCATCTCACAACTAGAACCATCTGTGTTAGATATCCAGACCCTTCAGAGAACAAATGCTATGGTTGGTTGTAATGGAAATTCTTTTATTGTGAGGTATTTGATTGAAGTACTCAAGTTCAAGCCTGAGAACATTAGGAGAATCAATTCCATAAGTGATTACCCTGCAGCCTTTGAAAATAAGGATATAAAAGCTGCTTTCTTTGTTGCACCTCATGCTAAAGTCTTCCTTGCAAAGTACTCATGCAAGGGCTTCATCAAAGCAGGGAACACCTTCAAGCTTGGTGGCTTTGGTTTTGTGGGTTCCTCTCCTCTTTGTCACTATTCTATTATGACATGCATGGTATTTCCTAAAAGTAACACTCTGGCTGCTGACATATCAGAGGCATTACTTACTATGATAGAGAGTGGAGAAACAGATCAACTAGAGAAAGTTATGCTATCCACTGCTAGTTGCTCTCCTTCAGACAGTGTTGAAAATGTTGGGTTAGGTTTTCAGCCTTTCCTTGGCCTATTTTACATCTGTGGTACTATTGCTGGACTGGGATTGTTATATGCCATGATCTGTTTAGTTGTGAAGAATGTAGAGACCTTGATGACCCACATACAAGTTCCATTGGCACAATTAAGGAGAATATGGAGATTGACAAACACTTTTTTGGCTCAGAGCTATTCAAAACTCCAACTCAGGAGAAGAATAAGTCCAGTCATTGAAACAAGAAATGCAGAGGAGACAGAGAGTAATAGGGAGCAAAATCCAGCGATCGTTGAACTAAATGTAATAATGGTTCCACATGCTTCCTGA 2832 0.3888 MLKMKTMSFSWIQDIFHFKGMNSPMSTIVCFFVLQLLAWSKVSANERRGHCLITPRPIMNIGAVLDLGSKMGKQQKIAMEIAVQEFNHLSCSKLVLKIKNSKGISTQAVAIDLAQNEEVIAIIGTITHNEATLASEINKKIKNIPILSLTSPAAPRRELLSPLLPYFIQMGNDISLHIQCIAAIVGEFKWQKVTPIYELNTGFSSDPGILIGLSYTLQLVGSEIDSYLALPPLSTLSDPKSMIEHKLNKLKRKSNRVFLIVQSSLEMANILFEKAKQMGMMEKGYVWVIPEGVAGLLDSVNSSVIFNMQGAIGFKTHLMEMSETFRQFKFKFRRRFALEYTEEESIDPSIFAVLSYDATWTIAQAAKKLQGRFSQEEFSEKILSSDFEGLSGKTSSRKGKLQESPTFSIINVIGKSYIELAFWSHVVGFSKNLVRHQLMEMTVNNDSTGVMGVVHWPGGLLSVPNGWTNSSNEARLMKIGVPAQGAFNQFVNVTYDQSRNSTSITGFSIDVFKAAVKRLPYHLPYVFVPFHGSYDEMVEKVHKKEFDAAVGDTEIMAYRYRLVEFTQPYVESGLDMVVTEDKSKQTWMVWKAFRKEMWLMMVAMHIFVGFVIWFIEREVNAELQGLGAMLWFLVTVIFYAHREPIRSPVARAVLGPWLFVIFIITTSFGSSLTTMMTISQLEPSVLDIQTLQRTNAMVGCNGNSFIVRYLIEVLKFKPENIRRINSISDYPAAFENKDIKAAFFVAPHAKVFLAKYSCKGFIKAGNTFKLGGFGFVGSSPLCHYSIMTCMVFPKSNTLAADISEALLTMIESGETDQLEKVMLSTASCSPSDSVENVGLGFQPFLGLFYICGTIAGLGLLYAMICLVVKNVETLMTHIQVPLAQLRRIWRLTNTFLAQSYSKLQLRRRISPVIETRNAEETESNREQNPAIVELNVIMVPHAS. 944
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g03068 943 Gene3D - 572 584 - -
Seca2g03068 943 Gene3D - 499 571 - -
Seca2g03068 943 Pfam Ligand-gated ion channel 821 852 IPR001320 GO:0015276|GO:0016020
Seca2g03068 943 Gene3D - 54 174 - -
Seca2g03068 943 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 60 901 IPR015683 -
Seca2g03068 943 Gene3D - 175 345 - -
Seca2g03068 943 CDD PBP1_GABAb_receptor_plant 60 433 IPR044440 -
Seca2g03068 943 SUPERFAMILY Periplasmic binding protein-like I 57 467 IPR028082 -
Seca2g03068 943 SMART GluR_14 478 825 IPR001320 GO:0015276|GO:0016020
Seca2g03068 943 Pfam Receptor family ligand binding region 76 413 IPR001828 -
Seca2g03068 943 FunFam Glutamate receptor 586 719 - -
Seca2g03068 943 PIRSF IGluLR_plant 22 935 IPR017103 -
Seca2g03068 943 Gene3D - 586 725 - -
Seca2g03068 943 FunFam Glutamate receptor 472 586 - -
Seca2g03068 943 CDD GluR_Plant 478 823 - -
Seca2g03068 943 FunFam Glutamate receptor 177 346 - -
Seca2g03068 943 Pfam Bacterial extracellular solute-binding proteins, family 3 501 820 IPR001638 -
Seca2g03068 943 SUPERFAMILY Periplasmic binding protein-like II 452 820 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g03068 Seca-Chr2 92215531 92220596 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g03068 59 865 Ion Channels AT5G11180 28.953 3.80e-106 350
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g03068 - - gmx:100778941 1124