LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca2g03062	ATGACAGACACTGACGATATTCAACCTCTTGTTTTTGACATTGGAACGTCATTTGTTAAGGCTGGTTTTGCTGGAGACGACGCCCCATATGCCGTGTTTCCCAGCATCATAGGTCATGTTGAAAAAGATGTATATGTTGGTGATGAGGCACTGTGTGAGTATGGTACTGTGACTCTCGAGTACCCCATTAAGCATGGATATGTAAGCAATTGGGACGATGTGGAAAATATTTTGGGGCATACGTTCTATAATGAACTTGGTGTTTCCCCAGAAGAGCATCCAATTTTGCTAAGTGACGCTCCTCTTAATCCCAAGGCCAACCGCGAGACCATGACCAAAATGATGTTTGAGGCTTTTAATACCCCCGCTATATATATATGCACTAGTGCTAATCTTTCACTATATACGTATGGTCTTACCACTGGTATTGTGTTGGAGTCTGGTGATGGTGTTAGCCATGCAGTCCCTATCTACGAGGGTTATGCCCTTCCACATGCCATCCAACGTCTTGATCTGGCTGGTGGTGGTGACATCACTAATTTCTTGGTGGAAATTTTGAATAAACGAGGGCATTATTCTTTTACCACTCCAGCAGAGCGTGAAATTGTGAGGGACATGAAAGAAAAGTTGGCTTACGTTGCTATTGACTATGAGCAAGAGCTGGATAAGAATTCTTATTCTTCTGTGAAGAAGAGCTATGAGTTGCCTGATGGGGAAGTAATCACAATTGCTGATGAGCGATTCAGATGTGCAGAGGCGTTGTTCCAACCATCCTTGATGGGAATGGAAAAAGCAGTGGGGATTCATGAGGCAACATACAACTCCATAATGAAATGTGAAATTGATCTCAGGAGAGACCTTTATGGTAGTATTGTACTTTCGGGAGGAACAACCATGTTCCCAGGCATCGTTGATAGAATGAGTAAGGAAATTTCTGCATTAGCCCCAAGTAGCATAAATGTCAAGGTTGCGGCGCGACCTGAGAGAGAGTACAGTGTCTGGATTGGTGGTTCTATCTTGGCATCCCTCACCAGCTTCGAGGCACAGTGGATTTCAAAGGATGAATATGATGAATCTGGTCCAACAGTTATACATAAAAAGTGCTTTTGA	1110	0.4333	MTDTDDIQPLVFDIGTSFVKAGFAGDDAPYAVFPSIIGHVEKDVYVGDEALCEYGTVTLEYPIKHGYVSNWDDVENILGHTFYNELGVSPEEHPILLSDAPLNPKANRETMTKMMFEAFNTPAIYICTSANLSLYTYGLTTGIVLESGDGVSHAVPIYEGYALPHAIQRLDLAGGGDITNFLVEILNKRGHYSFTTPAEREIVRDMKEKLAYVAIDYEQELDKNSYSSVKKSYELPDGEVITIADERFRCAEALFQPSLMGMEKAVGIHEATYNSIMKCEIDLRRDLYGSIVLSGGTTMFPGIVDRMSKEISALAPSSINVKVAARPEREYSVWIGGSILASLTSFEAQWISKDEYDESGPTVIHKKCF.	370

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca2g03062	369	SUPERFAMILY	Actin-like ATPase domain	138	369	IPR043129	-
	Seca2g03062	369	SMART	actin_3	7	369	IPR004000	-
	Seca2g03062	369	ProSitePatterns	Actins signature 2.	350	358	IPR004001	-
	Seca2g03062	369	FunFam	Actin, alpha skeletal muscle	172	264	-	-
	Seca2g03062	369	FunFam	Actin, alpha skeletal muscle	3	139	-	-
	Seca2g03062	369	PRINTS	Actin signature	107	120	IPR004000	-
	Seca2g03062	369	PRINTS	Actin signature	76	94	IPR004000	-
	Seca2g03062	369	PRINTS	Actin signature	28	37	IPR004000	-
	Seca2g03062	369	PRINTS	Actin signature	229	245	IPR004000	-
	Seca2g03062	369	PRINTS	Actin signature	132	151	IPR004000	-
	Seca2g03062	369	PANTHER	ACTIN	9	362	IPR004000	-
	Seca2g03062	369	Gene3D	-	130	332	-	-
	Seca2g03062	369	Pfam	Actin	5	369	IPR004000	-
	Seca2g03062	369	FunFam	Major actin	255	332	-	-
	Seca2g03062	369	FunFam	Putative actin-related protein 5	333	361	-	-
	Seca2g03062	369	Gene3D	Actin; Chain A, domain 4	172	265	-	-
	Seca2g03062	369	SUPERFAMILY	Actin-like ATPase domain	5	145	IPR043129	-
	Seca2g03062	369	CDD	NBD_sugar-kinase_HSP70_actin	10	173	-	-
	Seca2g03062	369	Gene3D	-	10	362	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca2g03062	Seca-Chr2	92041555	92049521	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Seca2g03062	1	369	Cytoskeleton Gene Families	AT3G12110	70.789	0.0	555

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca2g03062	K10355		-	gmx:100781831	543.117