Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g03058 ATGCTGGCATTTCTCAAAATGGGAAGGAGTTCTCCAGTATCACTCATTATGTGCTTCTTTGTTCTGCACTTGTTAGCATGGTCAAGGGTTCTACTAGCCAATGAAAGAAGAGGCAACTGTTTAGTCCCACCAAGGCCCATTATGAGCATAGGTGCTGTGCTTGATTTGGGTTCACTAATGCGTAAACATCAGAAGATAGCAATGGAAATTGCAGTTCAAGAGTTCAACCGCTTGAGCTGTTCCAAGCTGAATTTAAAGATAAAAGATTCCGGTGGGAATTCGGCTCAAGCAATTGCTAGTGCTATGGATCTAGCGCAGAGCAACCAAGTGCTAGCCATCGTAGGAACAATCACAAAAAGCGAAGCAACTCTGGCATGTGAATTAAGTGAGACCATAAAGAAGGTTCCTATCTTGTCTCTAACTTCACCTGCAGCCACAACAGAGTTATCATCTTCTCAATTGCCACACTTCATCCAAGTGGGAGAAGATGTCAATCTTCACATGAAATGCATTGCAGCTATTGTAGGAGAATTTAGGTGGCAAAAGGTGACACCAATCTATGAACTCAGTAACGGGTTTTCCTCTGATCCAGGGATATTGTTTAGCCTCTCCTATTCTCTTCGACTTGTTGGCTCTGAGATTGAAAACCATTTAGCTTTGCCTTCCTTATCCACTCTATCAGACCCAAAATCAATTATTGAAAATGAGCTTAGTAAGCTTAAGAGGAAGAGTAACAGGGTTTTCTTGATTGTGCAATCTTCTTTAGAGATGGCTAACTTGGTTTTTGAGAAAGCAAAGCAAATGGGTTTGATGGAAAAAGGTTCTGTGTGGGTTATCCCAGATGGGGTTGCTGGTCTTCTTGATTCAGTTAACTCATCAGTTATCTTTAACATGCAAGGTGTTGTGGGGTTTAAAACACACTTTATGGAAAGGAGTGACACATTTAGAAAGTTCAAGTTCAAGTTTAGGAGAAGGTTTACATTAGAATACCCTGAAGAAGAGAACATTAACCCAATCATCTTTGCACTCCAAGCATATGATGCAACTTGGACTATTGCTCAGGCTGCAAATAAATCACAAGGAAAGTTCAGCTTAGAAGAATTCACAGAAAAGATTATGTCTAGTAAATTTGGCAGACTAAGTGGAAAGACTAGCTCCAAGAATGATAACTTACTGCAATCACCAACCTTCAATATAATTAATGTGATAGGAAAGAGTTACAGAGAATTGGCATTTTGGTCTCCATCACATGGTTTTTCCAAGAACATTGTCAGACATAAAGAAATGGAGATTAACACAGATAATGGTTCTGCTGGAGTTTTCAGAACAGTTTATTGGCCTGGAGACTCACAATCGGTTCCAAAAGGATGGACACACAGTAATGAGGAAAGGACACTGAAAATAGGAGTGCCTGCCAAAGGTGCCTTTACTCAGTTTGTGAATGTGACATATGATCAGAGCAGGAATGAAACTTCCTTCTCTGGTTTCTCAATTAGTGTCTTCAAAGCAGCTGTTAAACGTTTGCCTTATGACTTGCCATATGTGTTTGTTCCTTTCAATGGTTCTTATGATGAAATGGTTGATCATGTTTACAAAAAGACCTTGGATGCTGCTGTCGGAGACACATCAATAATGGCTTATAGATATCATTTAGTTGATTTCTCACAACCATATGTTGAATCTGGCCTTGACATGGTGGTTACTGAGCAATCAACTAAATTAAAAGAAACATGGATGTTTTTAGATGCTTTTACAAAAGAGATGTGGTTGATGATGGTAGCTATGCACATTTTTGTGGGATTTGTTATTTGGTTGATTGAACGGGAAGCTAATGCAGAACTAAGGGGATTGGGATCCATGCTTTGGTTTTTAGTCACTGTAATATTCTATGCACACAGAGAACCAATAAGAAGACCCTTGGCTCGAATTGTGCTAGCACCATGGTTACTAGGTATCTTCATTGTAACAAGTAGTTTCACAGCAAGTTTGACATCCATGATGACTATTTCACAAGTAGAGCCATCTGTGTTGGATATTCAGACCCTTCAGGAAAGAAATTCCCCAGTTGGTTGTGATGGAAATTCATTTATTGTGAAGTATTTGACTGAAGTGCTCAAATTCAAGCGTAAGAACATTAAGAAAATAAATTCCATAAGTGATTATCCTGCTGCATTTAAGAACAAGGATATAGAAGCTGCTTTCTTTGTTGTGCCTCATTCAAAAGTCTTTCTAGCAAAGTACTCATGCAAGGGCTTCATCAAAGCAGGGAACACTTTCAGGCTTGGTGGCTTTGGTTTTGTATTTCCAAAAGGTTCCACTCTAGCTGCTGACATATCTGAGGCATTGCTGAATGTGATAGAGAGTGGAGAAACAGAACAACTAGAAAAAGATATGCTGAATATGATAGAGAGTGGAGGGAATGCAAGTTGCTCTCCTTTAGAGAGCAAGGAAAGAGATAAGTCATCCATAGGATTTCAACCATTCCTTGGACTATTTGGCATCTGTTCTAGTGTTGCTACAGTGGCATTGTTATATAATATGATTTGTTTGTCCATGATGACAAGCCACATACAATTAACATTAACACAAATAAGGAGAATTCAGAGATGGACAACTGCATATTTTGCTCGGTGCTGTTCAAAACTCCAATCAAGGAGCATGAGAAGGGTAGGCACTGCCACAGAAACGAGAAGAGCAGAGGAGACAGTCACTAACAGCCAGCAGAGCCCAGTGGTTGTTGAGCTTGTTGATATAGTACTGGCTGCTCATGCTTCATGA 2778 0.397 MLAFLKMGRSSPVSLIMCFFVLHLLAWSRVLLANERRGNCLVPPRPIMSIGAVLDLGSLMRKHQKIAMEIAVQEFNRLSCSKLNLKIKDSGGNSAQAIASAMDLAQSNQVLAIVGTITKSEATLACELSETIKKVPILSLTSPAATTELSSSQLPHFIQVGEDVNLHMKCIAAIVGEFRWQKVTPIYELSNGFSSDPGILFSLSYSLRLVGSEIENHLALPSLSTLSDPKSIIENELSKLKRKSNRVFLIVQSSLEMANLVFEKAKQMGLMEKGSVWVIPDGVAGLLDSVNSSVIFNMQGVVGFKTHFMERSDTFRKFKFKFRRRFTLEYPEEENINPIIFALQAYDATWTIAQAANKSQGKFSLEEFTEKIMSSKFGRLSGKTSSKNDNLLQSPTFNIINVIGKSYRELAFWSPSHGFSKNIVRHKEMEINTDNGSAGVFRTVYWPGDSQSVPKGWTHSNEERTLKIGVPAKGAFTQFVNVTYDQSRNETSFSGFSISVFKAAVKRLPYDLPYVFVPFNGSYDEMVDHVYKKTLDAAVGDTSIMAYRYHLVDFSQPYVESGLDMVVTEQSTKLKETWMFLDAFTKEMWLMMVAMHIFVGFVIWLIEREANAELRGLGSMLWFLVTVIFYAHREPIRRPLARIVLAPWLLGIFIVTSSFTASLTSMMTISQVEPSVLDIQTLQERNSPVGCDGNSFIVKYLTEVLKFKRKNIKKINSISDYPAAFKNKDIEAAFFVVPHSKVFLAKYSCKGFIKAGNTFRLGGFGFVFPKGSTLAADISEALLNVIESGETEQLEKDMLNMIESGGNASCSPLESKERDKSSIGFQPFLGLFGICSSVATVALLYNMICLSMMTSHIQLTLTQIRRIQRWTTAYFARCCSKLQSRSMRRVGTATETRRAEETVTNSQQSPVVVELVDIVLAAHAS. 926
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g03058 925 Gene3D - 472 577 - -
Seca2g03058 925 FunFam Glutamate receptor 167 336 - -
Seca2g03058 925 SMART GluR_14 465 801 IPR001320 GO:0015276|GO:0016020
Seca2g03058 925 SUPERFAMILY Periplasmic binding protein-like I 48 457 IPR028082 -
Seca2g03058 925 SUPERFAMILY Periplasmic binding protein-like II 442 796 - -
Seca2g03058 925 PIRSF IGluLR_plant 13 913 IPR017103 -
Seca2g03058 925 Pfam Receptor family ligand binding region 65 402 IPR001828 -
Seca2g03058 925 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 49 848 IPR015683 -
Seca2g03058 925 Pfam Ligand-gated ion channel 797 835 IPR001320 GO:0015276|GO:0016020
Seca2g03058 925 Gene3D - 45 166 - -
Seca2g03058 925 CDD PBP1_GABAb_receptor_plant 49 423 IPR044440 -
Seca2g03058 925 CDD GluR_Plant 464 799 - -
Seca2g03058 925 Gene3D - 167 337 - -
Seca2g03058 925 Gene3D - 578 719 - -
Seca2g03058 925 Gene3D - 343 469 - -
Seca2g03058 925 FunFam Glutamate receptor 577 710 - -
Seca2g03058 925 Pfam Bacterial extracellular solute-binding proteins, family 3 490 796 IPR001638 -
Seca2g03058 925 FunFam Glutamate receptor 461 576 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g03058 Seca-Chr2 91956652 91961131 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g03058 48 795 Ion Channels AT2G29120 32.056 7.94e-118 380
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g03058 - - gmx:100778941 1257.28