Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g03035 ATGATCGTAGGTGGTTCTTCCCCACTAACTTCGAAGAGGAGAAGGGTCACCAACATTTATTCCACGGAGATGGATATTGAAGCTGCTAAGGCCAAGCTTGCAGCTATGAAAGAAAAATTTGGACGAGAGATCCATGTTTTTGAAACATCAGCTCTTTCTCCATCTTCAAATGCTGCATCATCCAATGAAGGAGAGGAGACTGATGACTTCTATGAGTTTACTGCAGAAGATTATTACCGACTTATGGCTACTAAAAAGGAAGATAAATTCTTGAAGACTCGAAAAATCCGAGAAGCAGAAGAGGCGTCTCGTAGGTCAAGAATAACCAAAGCAGTAATTAGAGTTCGCTTCCCTGATAATCACACATTGGAGGCTACCTTCCACCCATCAGAAACAGTCCAGAGTTTAATTGATCTCCTCACTAAAGTGATTGCACAGCCAGAGCAGCCATTTCATATATATACTACTCCACCTAAGAAGCTGATCACTAACATGTCTCAAGATTTTTATACTGCTGGCTTTTGTCCCGGTGCCATTGTGTACTTTTCATATAATGTTCCAAAAGGTGATAACACTGTTGTTGACCATATTGGTCCTTACCTACACGAAGAGGTCTTATCTTTGAAGGGTTTGGAATCGGATGGTGCTAATGATGAAGGCCAGCAATCTGAACCTGTACAGTGTGCACCAGAGCCTGTTGAGGCAACACAACCCCTTTCAGTCCAAGAACGTAAGCCTTCTGAGAAGAAGCTTGTTAAACCAAAATGGCTAAAAATGTGA 780 0.4192 MIVGGSSPLTSKRRRVTNIYSTEMDIEAAKAKLAAMKEKFGREIHVFETSALSPSSNAASSNEGEETDDFYEFTAEDYYRLMATKKEDKFLKTRKIREAEEASRRSRITKAVIRVRFPDNHTLEATFHPSETVQSLIDLLTKVIAQPEQPFHIYTTPPKKLITNMSQDFYTAGFCPGAIVYFSYNVPKGDNTVVDHIGPYLHEEVLSLKGLESDGANDEGQQSEPVQCAPEPVEATQPLSVQERKPSEKKLVKPKWLKM. 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g03035 259 CDD UBX2_UBXN9 111 184 - -
Seca2g03035 259 ProSiteProfiles UBX domain profile. 106 182 IPR001012 GO:0005515
Seca2g03035 259 Pfam UBX domain 109 176 IPR001012 GO:0005515
Seca2g03035 259 SUPERFAMILY Ubiquitin-like 84 182 IPR029071 -
Seca2g03035 259 MobiDBLite consensus disorder prediction 243 259 - -
Seca2g03035 259 Gene3D - 40 181 - -
Seca2g03035 259 MobiDBLite consensus disorder prediction 213 259 - -
Seca2g03035 259 PANTHER PLANT UBX DOMAIN-CONTAINING PROTEIN 1 1 259 IPR044232 GO:0032984|GO:0051117
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g03035 Seca-Chr2 90607146 90612959 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g03035 22 139 C2H2 Transcription Factor Family AT2G01650 30.328 7.10e-07 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g03035 K15627 - gmx:100792947 398.667
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca2g03035 2 90607146 90612959 Seca2g03035 2 90607146 90612959 ECH