Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g03021 ATGGTGGTGAGTGAAGAACAAAAATGCAGCCCCATAAACCAAAAGAACATGTTGACACAGTCAAACTCAAATATCCAAAACGTGGCCACCCTTTTCAGTCCAAGGTTCAAATCTGCTGCTGCTATGGCCGGTTGGGATGAAGAAGCGCTGTTACTGGCCAGTCTCATCGTTGAAGACACGCCGGAAAGAGATCGAAAGTGTAGGAAGCGCACTGCTTTGAACTCCAAGACCCCACCCACCAATTCAGCAAGGAAACGCAGAGGTCAGAGGAGTCCACAACCAATCACTGTAGCTGTTATTAATCTTGATGAAGAAGAAACTCCCACAAAAGATAGTGGGAAAAAGAAGAAGGAAAAGAAGACTTGTGTCAATGAAGGAGGAGGAAATGAATTGCCTGAGCGGAAGAGTTCTGGTGTCTCTTCCACCAGTTCTGCTCTTCCCTGCATTGATAAACTCAGGGAGGAGCTTTCCTGCGCAATTTGTTTGGAGATGTGCTATGAGCCAAGTACCACTCCTTGTGGTCACAGCTTTTGTATAAAATGTCTGCGATCTGCTGCAGACAAGTGTGGCAAAAAATGCCCCAAATGCAGGCAATTTATGAGCAATGGACGAGCTTGCACTGTGAACACAGTTTTATGGAATACAATACAGCTCCTGTTTCCTCAGGAAGTTGAAGCAAGGAAAGCAGCTGGTGCCTTGAATAGTCGACAGGCTCAGTTTGTGATTCCAGAAAAAGCATTTTATAGTAACCTAAGGAATGGAAGCACACAGACTGGAGCATCAAGCAGAAGTATGAGTTCAAGGAGAGGGGCAACAACACAGGAGGATGAGGATTCTACATTTGCTAGAAGGTTACAGAGAGAAATTGATGGACAAAACCACCTAGGAACAACACAGGAGGATGAGGATTCTACATTTGCTAGAAGGTTACAGAGAGAAATTGATGGACAAAACCACCTAGGAACAACAAGGGCTCAGAGTAATTCAAGGAATCAAACCACATCATCATTATCTGTAAGAATGAGTGCAAGAAGATTGGTTTCTAGCCAAGATGAGGATGCTGCTTTGGCTCTAAGGTTGCAAAGAGAAGAGTTTATGCAAATTCAGTCCAGCAGACCCTCCTCTTCTTCATTAGCTAGAGCAAATTTGAGGGCTATGGCATCTAGAGCCATGAATCTTCGTATTAGGGATAGAAGAACATAA 1203 0.4414 MVVSEEQKCSPINQKNMLTQSNSNIQNVATLFSPRFKSAAAMAGWDEEALLLASLIVEDTPERDRKCRKRTALNSKTPPTNSARKRRGQRSPQPITVAVINLDEEETPTKDSGKKKKEKKTCVNEGGGNELPERKSSGVSSTSSALPCIDKLREELSCAICLEMCYEPSTTPCGHSFCIKCLRSAADKCGKKCPKCRQFMSNGRACTVNTVLWNTIQLLFPQEVEARKAAGALNSRQAQFVIPEKAFYSNLRNGSTQTGASSRSMSSRRGATTQEDEDSTFARRLQREIDGQNHLGTTQEDEDSTFARRLQREIDGQNHLGTTRAQSNSRNQTTSSLSVRMSARRLVSSQDEDAALALRLQREEFMQIQSSRPSSSSLARANLRAMASRAMNLRIRDRRT. 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g03021 400 ProSitePatterns Zinc finger RING-type signature. 173 182 IPR017907 -
Seca2g03021 400 MobiDBLite consensus disorder prediction 73 89 - -
Seca2g03021 400 MobiDBLite consensus disorder prediction 316 338 - -
Seca2g03021 400 PANTHER UNCHARACTERIZED 344 392 - -
Seca2g03021 400 ProSiteProfiles Zinc finger RING-type profile. 158 197 IPR001841 -
Seca2g03021 400 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 101 227 IPR013083 -
Seca2g03021 400 MobiDBLite consensus disorder prediction 315 338 - -
Seca2g03021 400 MobiDBLite consensus disorder prediction 104 124 - -
Seca2g03021 400 MobiDBLite consensus disorder prediction 252 280 - -
Seca2g03021 400 MobiDBLite consensus disorder prediction 63 144 - -
Seca2g03021 400 SUPERFAMILY RING/U-box 150 221 - -
Seca2g03021 400 Pfam Zinc finger, C3HC4 type (RING finger) 158 196 - -
Seca2g03021 400 MobiDBLite consensus disorder prediction 252 269 - -
Seca2g03021 400 SMART ring_2 158 196 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g03021 Seca-Chr2 90036521 90038786 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g03021 71 197 C2H2 Transcription Factor Family AT5G39550 31.250 1.21e-07 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g03021 - - gsj:114390146 429.869
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca2g03021 2 90036521 90038786 Seca2g03021 2 90036521 90038786 ECH