Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g03008 ATGGGAAGACAACCTTGCTGTGATAAGGTTGGTTTGAAGAGAGGTCCATGGACTATTGAAGAAGATCACAAGCTCATGAACTTCATCCTCAACAATGGCATACATTGCTGGAGAATGGTTCCCAAACTTGCAGGTTATGGTGAAGGTCTTCTAAGATGTGGAAAAAGCTGCAGATTGAGATGGATTAATTATCTGAGGCCAGACCTTAAGAGAGGTGGCTTCACAGAAATGGAAGAGGATCAAATTATACAATTACATGCACGTCTTGGTAACAGGTGGTCTAAGATTGCATCACATTTTCCTGGGAGGACAGACAATGAAATCAAGAACCATTGGAACACAAGAATCAAGAAGAGGCTGAAGCTCCTTGGTCTGGACCCTGTGACCCACAAACCAATTGAGCAAAAGGAACACACTGATGAGGATGAAAAAAGTAAGACCAACCTACTAGAGCCAAATATTTCTTTAGGCTCTGAAGAAAATGTGGAGATTAAATCCTTGGACAGTGATGCCACCAAGGAAATTGTGACAAAAACAGAAGGGAAAAGAGAAGAGAACAATGTCAGTTGGGATGATACCACTGAACTTCTAAACAATTTTGAAATGCTATGCTCACAATTGGACTTGGAATCATGGATGAGCCAAGAAACAAACACTGCTAGTACTAATTCATTTTGTAGTTCTTCTGTCTCTCTTGATGATACTAGCCACCTTTCAATGGGTGAATCCCCTTACCTTAAGGAAAATTCCTTACAGCAATGGGTTGATAGTATGGATTCAAATCTCTCATGGGATGGCTTCAATCCTTTTGACCAAGACATTTTCTTCCAGGAAAATAGGGAATAA 846 0.4043 MGRQPCCDKVGLKRGPWTIEEDHKLMNFILNNGIHCWRMVPKLAGYGEGLLRCGKSCRLRWINYLRPDLKRGGFTEMEEDQIIQLHARLGNRWSKIASHFPGRTDNEIKNHWNTRIKKRLKLLGLDPVTHKPIEQKEHTDEDEKSKTNLLEPNISLGSEENVEIKSLDSDATKEIVTKTEGKREENNVSWDDTTELLNNFEMLCSQLDLESWMSQETNTASTNSFCSSSVSLDDTSHLSMGESPYLKENSLQQWVDSMDSNLSWDGFNPFDQDIFFQENRE. 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g03008 281 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 120 IPR017930 -
Seca2g03008 281 SMART sant 70 118 IPR001005 -
Seca2g03008 281 SMART sant 13 67 IPR001005 -
Seca2g03008 281 FunFam Myb-related protein 315 73 150 - -
Seca2g03008 281 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 212 - -
Seca2g03008 281 Gene3D - 11 71 - -
Seca2g03008 281 Pfam Myb-like DNA-binding domain 14 65 IPR001005 -
Seca2g03008 281 Pfam Myb-like DNA-binding domain 71 114 IPR001005 -
Seca2g03008 281 ProSiteProfiles Myb-like domain profile. 66 116 IPR001005 -
Seca2g03008 281 CDD SANT 74 114 IPR001005 -
Seca2g03008 281 Gene3D - 73 151 - -
Seca2g03008 281 FunFam MYB-related transcription factor 13 70 - -
Seca2g03008 281 CDD SANT 16 65 IPR001005 -
Seca2g03008 281 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Seca2g03008 281 ProSiteProfiles Myb-like domain profile. 9 65 IPR001005 -
Seca2g03008 281 SUPERFAMILY Homeodomain-like 11 112 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g03008 Seca-Chr2 89173524 89175045 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g03008 1 150 MYB Transcription Factor Family AT5G16600 70.000 3.30e-75 231
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Seca2g03008 Myb_DNA-binding 2.3e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g03008 K09422 - gmx:100783231 475.707