Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g02950 ATGCTCCCCACTTTCCCCCACCTCTTGAGAAAGAGAATAGCAAAAATGGCTCACCTTTCATGCTTCCTTCTTTTAGTACTCTCTCTTCTGACACCCAACATTGTTTCCTCTTCAGCAGTTCAAGACCCTGAACTAGTTATACAAGATGTACACAGAAGCATCAATGCCTCCAGAAGAAACTTGGGTTATTTATCATGTGGAACAGGTAACCCCATTGATGATTGCTGGCGCTGTGACCCAAATTGGGAAATCAACCGTCAGAGACTAGCAGATTGTGCCATTGGGTTTGGCAAAGATGCCATTGGAGGAAGAAATGGTCAAATCTACATTGTCACTGATTCTGGTGATGATGACCCAGTGAACCCCAAGCCAGGAACTTTGAGGCATGCTGTTATACAGGATGAGCCATTGTGGATAATTTTCAAGAGGGACATGGTGATTACCCTTAAACAAGAGCTTGTGATGAACTCTTTCAAGACAATTGATGGAAGGGGTGCTAGTGTTCACATTGCTGGTGGGGGTTGCATTACCATACATTATGTGAGTAACATCATCATCCATGGCATTCACATCCATGATTGTAAGCCTACGGGACATGGGTATATAAGAGACTCCCCTCGCCATTATGGATGGTGGACTATTTCGGATGGTGATGGTGTGTCTATCTTTAATTCAAGGCATATATGGGTTGACCATTGCTCCTTGTCTAACTGCCATGATGGTCTCATTGATGCCATCCATGGATCCACAGCTATCACCATCTCTAACAATTACATGACCCATCATAACAAGGTCATGCTTTTGGGTCACAGTGACTCTTACACACAAGACAAGGACATGCAGGTCACAATAGCCTTCAATCATTTTGGAGAAGGCCTTGTCCAAAGAATGCCAAGGTGTAGACATGGGTATTTTCATGTGGTGAACAATGACTATACACATTGGGAAATGTATGCCATTGGTGGGAGTGCTAACCCAACCATTAATAGTCAAGGGAACAGGTTTCTTGCACCAGATAACAGGTTTAGCAAGGAGGTAACAAAGCATGAGAATGCTCCACAGAATGAATGGATGCACTGGAACTGGAGGTCAGAAGGGGACATGTTCTTGAATGGAGCATACTTCACACAATCTGGTGCAGGTGCTACTTTTGCTTATGCCAGAGCAACAAGTCTGAGTGTAAGACCATCTTCTCTTGTTGGTTCCATGACAGTGACTGCAGGTGCACTCAACTGCAGGAAAGGCACCCGTTGCTGA 1257 0.4447 MLPTFPHLLRKRIAKMAHLSCFLLLVLSLLTPNIVSSSAVQDPELVIQDVHRSINASRRNLGYLSCGTGNPIDDCWRCDPNWEINRQRLADCAIGFGKDAIGGRNGQIYIVTDSGDDDPVNPKPGTLRHAVIQDEPLWIIFKRDMVITLKQELVMNSFKTIDGRGASVHIAGGGCITIHYVSNIIIHGIHIHDCKPTGHGYIRDSPRHYGWWTISDGDGVSIFNSRHIWVDHCSLSNCHDGLIDAIHGSTAITISNNYMTHHNKVMLLGHSDSYTQDKDMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRFLAPDNRFSKEVTKHENAPQNEWMHWNWRSEGDMFLNGAYFTQSGAGATFAYARATSLSVRPSSLVGSMTVTAGALNCRKGTRC. 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g02950 418 Gene3D - 69 411 IPR012334 -
Seca2g02950 418 PANTHER PECTATE LYASE 18-RELATED 41 416 IPR045032 GO:0030570
Seca2g02950 418 FunFam Pectate lyase 69 411 - -
Seca2g02950 418 SMART amb_all 144 341 IPR002022 -
Seca2g02950 418 PRINTS Pollen allergen Amb family signature 92 109 IPR018082 -
Seca2g02950 418 PRINTS Pollen allergen Amb family signature 216 237 IPR018082 -
Seca2g02950 418 PRINTS Pollen allergen Amb family signature 389 412 IPR018082 -
Seca2g02950 418 PRINTS Pollen allergen Amb family signature 296 315 IPR018082 -
Seca2g02950 418 PRINTS Pollen allergen Amb family signature 360 384 IPR018082 -
Seca2g02950 418 PRINTS Pollen allergen Amb family signature 318 337 IPR018082 -
Seca2g02950 418 PRINTS Pollen allergen Amb family signature 152 168 IPR018082 -
Seca2g02950 418 PRINTS Pollen allergen Amb family signature 116 141 IPR018082 -
Seca2g02950 418 Pfam Pectate lyase 150 335 IPR002022 -
Seca2g02950 418 SUPERFAMILY Pectin lyase-like 54 412 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g02950 Seca-Chr2 88260953 88262712 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g02950 10 418 Polysaccharide Lyase AT5G63180 73.123 0.0 639
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g02950 K01728 - gmx:100794814 748.043