Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g02949 ATGCTTCTGCTCCAACTCGTTCAGCTTTTGAGTCCTCAAATCGATAACATCTCTTGTGTTTTTGCTTCAATTCCATGCTTCAATTCCAACCTTAGGGTAGAAGTTGACAATCCAGAAATCCGGAATTATATAGTATTCAATTTCAGATCCAAAGATCCAGAATTACTAGCTGAGTCAGGGACATTCAAGATATCTAGGGAAGGTTATGTTCTGCTTCAATTTGCGCCAGCTGTTGGTTCACGCCAATATGATTGGAACAAAAAGCAGGTGAGTTATGTGTGTCCTGTAATTTGGGGTTACTTCTATTCTGATGTTGTGTCAAAACTGGGAAGTTATTTATGTGCTCTCTACTCTGAGAGTATTAAACCAGTCTGCTAA 378 0.3915 MLLLQLVQLLSPQIDNISCVFASIPCFNSNLRVEVDNPEIRNYIVFNFRSKDPELLAESGTFKISREGYVLLQFAPAVGSRQYDWNKKQVSYVCPVIWGYFYSDVVSKLGSYLCALYSESIKPVC. 126
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g02949 125 SUPERFAMILY ssDNA-binding transcriptional regulator domain 55 91 IPR009044 GO:0003677|GO:0006355
Seca2g02949 125 Gene3D Transcriptional Coactivator Pc4; Chain A 33 103 IPR009044 GO:0003677|GO:0006355
Seca2g02949 125 Pfam Whirly transcription factor 57 95 IPR013742 GO:0003697|GO:0006355|GO:0006952
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g02949 Seca-Chr2 88257146 88257870 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g02949 51 90 Whirly Transcription Factor Family AT2G02740 63.415 8.34e-13 61.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Whirly Seca2g02949 Whirly 3.5e-12 CL0609
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g02949 K26559 - pcin:129310571 65.0846