Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g02901 ATGAAGAAGGAGGATTTAGTAAAAAAGTTGGAGACAATAGCAAAATCTGGAACTTCAGTTAACTATGTTGAAGTCATTAGCAAGCATAATGATGATAAAACAGGAAAAGCAGGAGCTTCTAAGAAGCCTGGAGAAGACAAAAAACTCTCAAAAGAGGTAAAGGGCTGCTGGTTGTGGAAGAAGCCTCTACCACAAAGCAGAAAAATGGTTAATGTGGTAAATCCTGAGGATGGGACTCATTTACTTTATACATTTTGCTTCTGTTTCATTATTTTTGCAGAGTTTGGCTTCCAAATTTGTCACAAGGTGATGTCTTTTCCTCTTACTACACCTTGTGCCCACAACTTCTACAAAGCCTATCTGGAGGGAGCCTTTTCTGGCCAAAGTTTCATTAGAAAGAGGGCATGTGAAAGTGGATGTACTTTAAGGGCACAAAAGAACATTATGAAATGCCCATCATGTTCAATTGACATAGCTGGGTTTCTTCAGAATCCTCAGGTACTACGACACATGTTTTTAGTTAGATTTTTAGGAATTGAACTGCCCTAG 549 0.3862 MKKEDLVKKLETIAKSGTSVNYVEVISKHNDDKTGKAGASKKPGEDKKLSKEVKGCWLWKKPLPQSRKMVNVVNPEDGTHLLYTFCFCFIIFAEFGFQICHKVMSFPLTTPCAHNFYKAYLEGAFSGQSFIRKRACESGCTLRAQKNIMKCPSCSIDIAGFLQNPQVLRHMFLVRFLGIELP. 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g02901 182 PANTHER E3 UBIQUITIN-PROTEIN LIGASE UHRF-RELATED 41 171 IPR045134 -
Seca2g02901 182 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 92 176 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g02901 Seca-Chr2 86601873 86603756 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g02901 52 174 C2H2 Transcription Factor Family AT5G39550 43.902 7.71e-26 101
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g02901 K10638 - gmx:100781044 155.992