Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g02876 ATGGCTAGGACCTGGCTTATTGACAGTGGAGGATTTGCAAAGAAAGTGAAAAACACTACTCTGTCTTCAGCTGATCAGATCAAGGATTGTGGGGCATACCGTGAATGCCCAAACTGCCATCATCATATTGATAACAGTGATGTTTCTACTGAATGGCCTGGCTTTCCTCTTGGTGTAAAGTTTGATCCTTCTGATGTAGAACTCTTAGAACATTTAGCAGCAAAATGTGGCCTTGGGAACACAGAGCCACACATGTTTATCAATGAGTTCATCCCAACACTTGAAGAAGACCAAGGTATTTGCTACACACATCCAGAAAATCTTCCAGGTGCTAAGAAAGATGGGAGTAGTGTACATTTCTTTCATAGAACAATCAATGCATATAGTACTGGTCAGCGAAAGCGTCGAAAGATTCAGCATAATGATTTGACTGAAGAGCATGTACGCTGGCATAAGACTGGTAAGACCAAAGCTGTGATAGAAGATGGAGTACATAAGGGCTTTAAGAAGATCATGGTTCTTTATATAAGGTGTAAGAAAGGGTCCAAGCCTGATAAATCCAACTGGATAATGCATCAGTACCATCTAGGGACTGAAGAAGATGAGAAGGATGGTGAATATGTGGTCTCAAAAATTTTTTATCAACAAAAGGGGACGGAGAAAAATGAGAGTACAATGGTTGAAGATTCTGACAACATAATATCGCGAACAAGTCCAAGGACTCCAAAACCAAATCCCCCCAATCCACCTCGCACAGGAAAATTCATTGACTGTGATGATAATATTGATGAAACTGCACTTCTGTCATTTGCCCAGGATGCCAAGTCTATCCCTGGAAAATCACATACCCCACTAACTGATGGTCAGGATCAGGACAATACCGGCAACCCTGCATGGTTGGCTGGTGAATCACAGGCTGTGGAGAATTCTGAATATGATGGCTTGGATGACATATTATTGTGCAAGGAGATTTTAGATTCTTCTGCTCCATTAAATGATTCTGGATTGGACCCCTCCACTCTCAATGGCTTTGCTTGCCATGAAAATGAAATGGCTAGAAATGATAATGTAACTTACGGAACTTCTGTGCTGGATACACTGGAATTGGATACTCCTCCAGATTTTGATCTTTCTGATTTGAATTTTTGTTCTCAGGACAGCATTCTTGATTGGCTGGACTGGTTATGA 1188 0.4125 MARTWLIDSGGFAKKVKNTTLSSADQIKDCGAYRECPNCHHHIDNSDVSTEWPGFPLGVKFDPSDVELLEHLAAKCGLGNTEPHMFINEFIPTLEEDQGICYTHPENLPGAKKDGSSVHFFHRTINAYSTGQRKRRKIQHNDLTEEHVRWHKTGKTKAVIEDGVHKGFKKIMVLYIRCKKGSKPDKSNWIMHQYHLGTEEDEKDGEYVVSKIFYQQKGTEKNESTMVEDSDNIISRTSPRTPKPNPPNPPRTGKFIDCDDNIDETALLSFAQDAKSIPGKSHTPLTDGQDQDNTGNPAWLAGESQAVENSEYDGLDDILLCKEILDSSAPLNDSGLDPSTLNGFACHENEMARNDNVTYGTSVLDTLELDTPPDFDLSDLNFCSQDSILDWLDWL. 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g02876 395 MobiDBLite consensus disorder prediction 282 298 - -
Seca2g02876 395 PANTHER NAC DOMAIN-CONTAINING PROTEIN 73 3 308 IPR044799 GO:0003700
Seca2g02876 395 FunFam NAC domain-containing protein 8 64 219 - -
Seca2g02876 395 Gene3D NAC domain 64 219 IPR036093 GO:0003677|GO:0006355
Seca2g02876 395 MobiDBLite consensus disorder prediction 274 298 - -
Seca2g02876 395 MobiDBLite consensus disorder prediction 218 258 - -
Seca2g02876 395 SUPERFAMILY NAC domain 39 215 IPR036093 GO:0003677|GO:0006355
Seca2g02876 395 ProSiteProfiles NAC domain profile. 55 215 IPR003441 GO:0003677|GO:0006355
Seca2g02876 395 Pfam No apical meristem (NAM) protein 56 196 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g02876 Seca-Chr2 85813268 85820763 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g02876 36 215 NAC Transcription Factor Family AT1G28470 56.216 7.69e-66 210
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Seca2g02876 NAM 7.5e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g02876 - - gmx:100780442 624.394
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca2g02876 2 85813268 85820763 Seca2g02876 2 85813268 85820763 ECH