Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g02864 ATGGAGTCAACTGTTGAAGGAGTTGAGTCTTTATCTGAGGTTCAGAACTCAGTTTCTGGGGTAGTTCATGATCCCCCTTCGACATCGGGGATTCCCCGGCCTTCCCAGCCTCCCTTGAGAGCATCAAGAAATCATGGGACCTCTTCCAATCACCATAATTCTGGAATGAAGACCAGCCAGCATCAAAAGCAACCCAATCAGGAGGCTAACAATGTGAAGCATGAAGGAGTGCCAAATATGGAGAAGCAGTATAATAGCCCTAATGGCAAATCTGACTATGTGAGCCTTAATAAAACTATTGAAAGTTGTTTGGGGAAGAATATCTCCAAAATGGAAACAAAATTGTGCATCGATGATTCCAAGAATTGCGAATCTAGTGGAGTATTAGAATCTGAAAATTACATAGTAGGTTCATCAAAAGGTGTTGTTGATCAAGCAAATAGTAGATATTCTGCCACTGTCTATTCAGAAGCCAAAGAAAGTTTCACCAATACTGGAGTAAGTGAATGTGTCAGTGTTGATAAGTCAGTTGAAAGTGGAGAAGTTACTAATTCCTGTGAATTTAATGAGAGCAGGAAGACTAGCATCTATAGAGAGAGCACTGGAAGTGATGTTAGTGATGAGAGCAGCACCAGTACTTTTAGCAGTTCTTTGTATAAACCCCACAAGGCAAATGATGTAAGATGGGAAGCAATTCAAGCCATCCGAGCTCGTGATGGGGGATTGGAAATGAGACATTTTAGGTTGTTGAAGAAGTTGGGATGTGGGGACATAGGAAGTGTATATCTTGCAGAGTTAAGTGGCACAAGGACTTGTTTTGCCATGAAAGTAATGAACAAAACAGAGCTGGCAAGTCGCAAGAAGCTTCTGAGGGCTCAGACAGAGAGAGAGATATTGCAGTCTCTAGATCATCCATTTTTACCCACATTGTATACACACTTTGAGACAGAGACATTCTCCTGCTTGGTGATGGAGTTTTGCCCTGGTGGGGACCTACATGCACTCAGACAAAGACAACCTGGGAAGTATTTTTCAGAGCATGCTGCCAGGTTTTACGTGGCAGAAGTTCTCCTTTCTTTGGAGTACTTGCACATGCTAGGGATCATCTATAGAGACCTTAAACCCGAAAATGTGTTAGTGAGAGAAGATGGTCACATTATGCTATCAGATTTTGATCTCTCTCTAAGGTGTGCTGTCAGTCCAACTCTGGTTAAGTCATCAAACACCAGCTTGGAGGCAAAAAGTTCAGGATACTGCATTCAACCTGCATGCATTGAACCAACTTGTGTAATGCAACCAGACTGCATCCAACCTTCATGTTTTACACCGCGTTTCCTATCCAGCAAATCCAAGAAAGAAAAAAAGCTCAAACCAAAGAATGACATGCATAATCAGGTGACCCCTCTCCCTGAGCTTATTGCCGAGCCTACAAATGCTCGATCAATGTCTTTCGTGGGCACACACGAGTACTTGGCGCCTGAAATCATTAAAGGTGAAGGGCATGGCAGTGCTGTAGACTGGTGGACATTTGGGATATTCTTATATGAGCTTTTGTTTGGTAGAACACCATTCAAAGGTTCAGCAAATCGCGCAACCCTATTCAATGTAGTTGGCCAGCCCTTAAGGTTTCCAGAATCACCTACTGTCAGCTTTGCTGCCAGGGACTTGATCAGAGGTTTACTTGTGAAAGAGCCTCAACATCGTCTTGCCTATCGACGCGGAGCAACAGAATTAAAACAACATCCATTCTTTCATAATGTTAACTGGGCACTGATTCGTTGTGCAAATCCTCCAGAGGTGCCAAGACAAGTTTTCAAAGCACTCACAGCTGCTGAAAAGGTGCCTGGAGTGAAGCCTTCTGGTAATTATTTAGATATTGATTTCTTTTGA 1890 0.4291 MESTVEGVESLSEVQNSVSGVVHDPPSTSGIPRPSQPPLRASRNHGTSSNHHNSGMKTSQHQKQPNQEANNVKHEGVPNMEKQYNSPNGKSDYVSLNKTIESCLGKNISKMETKLCIDDSKNCESSGVLESENYIVGSSKGVVDQANSRYSATVYSEAKESFTNTGVSECVSVDKSVESGEVTNSCEFNESRKTSIYRESTGSDVSDESSTSTFSSSLYKPHKANDVRWEAIQAIRARDGGLEMRHFRLLKKLGCGDIGSVYLAELSGTRTCFAMKVMNKTELASRKKLLRAQTEREILQSLDHPFLPTLYTHFETETFSCLVMEFCPGGDLHALRQRQPGKYFSEHAARFYVAEVLLSLEYLHMLGIIYRDLKPENVLVREDGHIMLSDFDLSLRCAVSPTLVKSSNTSLEAKSSGYCIQPACIEPTCVMQPDCIQPSCFTPRFLSSKSKKEKKLKPKNDMHNQVTPLPELIAEPTNARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLYELLFGRTPFKGSANRATLFNVVGQPLRFPESPTVSFAARDLIRGLLVKEPQHRLAYRRGATELKQHPFFHNVNWALIRCANPPEVPRQVFKALTAAEKVPGVKPSGNYLDIDFF. 630
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g02864 629 SMART serkin_6 247 584 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca2g02864 629 Gene3D Transferase(Phosphotransferase) domain 1 478 602 - -
Seca2g02864 629 Gene3D Transferase(Phosphotransferase) domain 1 331 398 - -
Seca2g02864 629 FunFam serine/threonine-protein kinase D6PK-like 331 398 - -
Seca2g02864 629 MobiDBLite consensus disorder prediction 1 91 - -
Seca2g02864 629 FunFam serine/threonine-protein kinase D6PK-like 479 602 - -
Seca2g02864 629 ProSitePatterns Serine/Threonine protein kinases active-site signature. 368 380 IPR008271 GO:0004672|GO:0006468
Seca2g02864 629 SUPERFAMILY Protein kinase-like (PK-like) 222 605 IPR011009 -
Seca2g02864 629 MobiDBLite consensus disorder prediction 1 24 - -
Seca2g02864 629 CDD STKc_phototropin_like 245 602 - -
Seca2g02864 629 PANTHER FLIPPASE KINASE 1-RELATED 61 606 - -
Seca2g02864 629 MobiDBLite consensus disorder prediction 40 73 - -
Seca2g02864 629 FunFam Serine/threonine-protein kinase D6PK-like 245 330 - -
Seca2g02864 629 Gene3D Phosphorylase Kinase; domain 1 245 330 - -
Seca2g02864 629 MobiDBLite consensus disorder prediction 198 218 - -
Seca2g02864 629 Pfam Protein kinase domain 481 584 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca2g02864 629 Pfam Protein kinase domain 248 401 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca2g02864 629 ProSiteProfiles Protein kinase domain profile. 247 584 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g02864 Seca-Chr2 85078326 85081423 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g02864 143 629 AGC Kinase Gene Family AT5G47750 69.980 0.0 701
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Seca2g02864 Pkinase 3.3e-37 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g02864 K08286 - gmx:100802402 1032.32