Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g02854 ATGCAAATTTTTCAGGTAAAGCGTCTACGAGAAAATTTGTATATAGCCATTCTTTTTCAGGACATATCCTACTTTGATAAAGAAAAAGTCGGTGCCTTAACAAGCAGGCTTGCAGCAGATTGTCAACGACTATCCCATGTTATAGGAAATGACCTTCAGTTGATATTACGCAACACTTTGCAGGGAGCAGGAGCAATGATTAATTTGCTGGCTTTATCTTGGCCTCTGGCATTATCTGCATTAGTGATTTGTTCTATGTTATCTGCAATCTTCCTGGTTTATGGCTGGTATCAAAGAAAAGCAGCAAAGTTAACCCAAGATTTCACAGCCTGTGCCAATGACGTAGCTCAGGAAACACTTTCTTTGATAAGAACTGTCCGAGTGTATGGAACAGGAGAAAAAGAATTTGGAAGGTACAAGAAATGGCTACAGAAATTAGCATTTATAAACAGTCGAGAGAGTGTGGCTTATGGGCTCTGGAACCTGAGCTTTAACACCCTTTACCGCTCAACTCAGATATTTGCAGTGCTGTTAGGAGGAATGTCTGTTCTGAATTGTTGTGTAACTGTTGAGCAACTTACTAAGTATGTATTATACTGTGAGTGGTTGATTTATGCTACTTGGAGGGTGACAAACAGCTTATCATCATTACTGCAGTCCATTGGAGCATCTGAAAAAATTTTCCAACTGATGAATCATCTGCCCAGTGACCAATTCTTAGCCAAAGGAGTTAAGTTGCCGAGGTTAATGGGGCACATTCAGTTTGTAAATGTATCATTTCATTATCCTTCAAGGATTATGATGCCTGTTCTAGAACACTTAAACTTCTCTGTAGAAGAAAATCAAGTCATTGCCATTGTTGGTCTGAGTGGTAGTGGAAAGAGCACATTGCTCAACCTTTTACTTCGTCTCTATGAGCCTAGTAGTGGTCAGATATACATTGATGGATTCCCTCTTAAAGAGTTGGATATCAGGTGGCTGAGGCAGAAAATCGGTTATGTTCCACAGGAATCCCATCTCTTTCACATGGACATTAGGTCAAACATAAAATATGGTTGCCCTAGGAACATAGAACAAGAAGATATTGAACGGGCAGCAAAACAAGCCTATGCCCATGACTTTATTTCTTCACTTCCTAATGGCTATGAAACCCTTGTTGATGACAATGTACTTAGTGGGGGACAAAAGCAGCGAATTGCCATAGCCAGGGCCATTCTTAGGAACCCAGTTATTATGATACTTGATGAAGCTACCAGTGCCCTAGATTCTGAGAGTGAGCATTATATCAAGGAGGTGTTGTTTGCGTTAAAAGATGAATCTAAACCACGAACCATCATTATCATAGCACATAGGCTTTCTACTATTAAAGCTTCTGACAGGATCTTTGTTATGGATGATGGTCGCATGATTGAGATGGGAAACCATGAAGAGCTTCTGCTCAAGGATGGGCTCTATGCAAAGTTGCATAATATTCAAGAAGATATTTTGACTTGA 1494 0.3996 MQIFQVKRLRENLYIAILFQDISYFDKEKVGALTSRLAADCQRLSHVIGNDLQLILRNTLQGAGAMINLLALSWPLALSALVICSMLSAIFLVYGWYQRKAAKLTQDFTACANDVAQETLSLIRTVRVYGTGEKEFGRYKKWLQKLAFINSRESVAYGLWNLSFNTLYRSTQIFAVLLGGMSVLNCCVTVEQLTKYVLYCEWLIYATWRVTNSLSSLLQSIGASEKIFQLMNHLPSDQFLAKGVKLPRLMGHIQFVNVSFHYPSRIMMPVLEHLNFSVEENQVIAIVGLSGSGKSTLLNLLLRLYEPSSGQIYIDGFPLKELDIRWLRQKIGYVPQESHLFHMDIRSNIKYGCPRNIEQEDIERAAKQAYAHDFISSLPNGYETLVDDNVLSGGQKQRIAIARAILRNPVIMILDEATSALDSESEHYIKEVLFALKDESKPRTIIIIAHRLSTIKASDRIFVMDDGRMIEMGNHEELLLKDGLYAKLHNIQEDILT. 498
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Seca2g02854 497 FunFam Multidrug ABC transporter ATP-binding protein 245 495 - -
Seca2g02854 497 Gene3D ABC transporter type 1, transmembrane domain 1 233 IPR036640 GO:0005524|GO:0016020
Seca2g02854 497 Gene3D - 244 495 IPR027417 -
Seca2g02854 497 ProSitePatterns ABC transporters family signature. 391 405 IPR017871 GO:0005524|GO:0016887
Seca2g02854 497 Pfam ABC transporter transmembrane region 5 201 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Seca2g02854 497 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 245 492 IPR027417 -
Seca2g02854 497 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 253 491 IPR003439 GO:0005524
Seca2g02854 497 PANTHER ABC TRANSPORTER B FAMILY 5 491 IPR039421 -
Seca2g02854 497 SMART AAA_5 280 468 IPR003593 GO:0016887
Seca2g02854 497 Pfam ABC transporter 271 419 IPR003439 GO:0005524
Seca2g02854 497 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 1 219 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Seca2g02854 497 SUPERFAMILY ABC transporter transmembrane region 6 237 IPR036640 GO:0005524|GO:0016020
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Seca2g02854 Seca-Chr2 84685338 84692297 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g02854 5 493 Calmodulin-binding Proteins AT2G36910 34.104 2.23e-74 253
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g02854 - - gmx:100797529 833.558