Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Seca2g02854 | ATGCAAATTTTTCAGGTAAAGCGTCTACGAGAAAATTTGTATATAGCCATTCTTTTTCAGGACATATCCTACTTTGATAAAGAAAAAGTCGGTGCCTTAACAAGCAGGCTTGCAGCAGATTGTCAACGACTATCCCATGTTATAGGAAATGACCTTCAGTTGATATTACGCAACACTTTGCAGGGAGCAGGAGCAATGATTAATTTGCTGGCTTTATCTTGGCCTCTGGCATTATCTGCATTAGTGATTTGTTCTATGTTATCTGCAATCTTCCTGGTTTATGGCTGGTATCAAAGAAAAGCAGCAAAGTTAACCCAAGATTTCACAGCCTGTGCCAATGACGTAGCTCAGGAAACACTTTCTTTGATAAGAACTGTCCGAGTGTATGGAACAGGAGAAAAAGAATTTGGAAGGTACAAGAAATGGCTACAGAAATTAGCATTTATAAACAGTCGAGAGAGTGTGGCTTATGGGCTCTGGAACCTGAGCTTTAACACCCTTTACCGCTCAACTCAGATATTTGCAGTGCTGTTAGGAGGAATGTCTGTTCTGAATTGTTGTGTAACTGTTGAGCAACTTACTAAGTATGTATTATACTGTGAGTGGTTGATTTATGCTACTTGGAGGGTGACAAACAGCTTATCATCATTACTGCAGTCCATTGGAGCATCTGAAAAAATTTTCCAACTGATGAATCATCTGCCCAGTGACCAATTCTTAGCCAAAGGAGTTAAGTTGCCGAGGTTAATGGGGCACATTCAGTTTGTAAATGTATCATTTCATTATCCTTCAAGGATTATGATGCCTGTTCTAGAACACTTAAACTTCTCTGTAGAAGAAAATCAAGTCATTGCCATTGTTGGTCTGAGTGGTAGTGGAAAGAGCACATTGCTCAACCTTTTACTTCGTCTCTATGAGCCTAGTAGTGGTCAGATATACATTGATGGATTCCCTCTTAAAGAGTTGGATATCAGGTGGCTGAGGCAGAAAATCGGTTATGTTCCACAGGAATCCCATCTCTTTCACATGGACATTAGGTCAAACATAAAATATGGTTGCCCTAGGAACATAGAACAAGAAGATATTGAACGGGCAGCAAAACAAGCCTATGCCCATGACTTTATTTCTTCACTTCCTAATGGCTATGAAACCCTTGTTGATGACAATGTACTTAGTGGGGGACAAAAGCAGCGAATTGCCATAGCCAGGGCCATTCTTAGGAACCCAGTTATTATGATACTTGATGAAGCTACCAGTGCCCTAGATTCTGAGAGTGAGCATTATATCAAGGAGGTGTTGTTTGCGTTAAAAGATGAATCTAAACCACGAACCATCATTATCATAGCACATAGGCTTTCTACTATTAAAGCTTCTGACAGGATCTTTGTTATGGATGATGGTCGCATGATTGAGATGGGAAACCATGAAGAGCTTCTGCTCAAGGATGGGCTCTATGCAAAGTTGCATAATATTCAAGAAGATATTTTGACTTGA | 1494 | 0.3996 | MQIFQVKRLRENLYIAILFQDISYFDKEKVGALTSRLAADCQRLSHVIGNDLQLILRNTLQGAGAMINLLALSWPLALSALVICSMLSAIFLVYGWYQRKAAKLTQDFTACANDVAQETLSLIRTVRVYGTGEKEFGRYKKWLQKLAFINSRESVAYGLWNLSFNTLYRSTQIFAVLLGGMSVLNCCVTVEQLTKYVLYCEWLIYATWRVTNSLSSLLQSIGASEKIFQLMNHLPSDQFLAKGVKLPRLMGHIQFVNVSFHYPSRIMMPVLEHLNFSVEENQVIAIVGLSGSGKSTLLNLLLRLYEPSSGQIYIDGFPLKELDIRWLRQKIGYVPQESHLFHMDIRSNIKYGCPRNIEQEDIERAAKQAYAHDFISSLPNGYETLVDDNVLSGGQKQRIAIARAILRNPVIMILDEATSALDSESEHYIKEVLFALKDESKPRTIIIIAHRLSTIKASDRIFVMDDGRMIEMGNHEELLLKDGLYAKLHNIQEDILT. | 498 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Seca2g02854 | 497 | FunFam | Multidrug ABC transporter ATP-binding protein | 245 | 495 | - | - | |
Seca2g02854 | 497 | Gene3D | ABC transporter type 1, transmembrane domain | 1 | 233 | IPR036640 | GO:0005524|GO:0016020 | |
Seca2g02854 | 497 | Gene3D | - | 244 | 495 | IPR027417 | - | |
Seca2g02854 | 497 | ProSitePatterns | ABC transporters family signature. | 391 | 405 | IPR017871 | GO:0005524|GO:0016887 | |
Seca2g02854 | 497 | Pfam | ABC transporter transmembrane region | 5 | 201 | IPR011527 | GO:0005524|GO:0016020|GO:0055085|GO:0140359 | |
Seca2g02854 | 497 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 245 | 492 | IPR027417 | - | |
Seca2g02854 | 497 | ProSiteProfiles | ATP-binding cassette, ABC transporter-type domain profile. | 253 | 491 | IPR003439 | GO:0005524 | |
Seca2g02854 | 497 | PANTHER | ABC TRANSPORTER B FAMILY | 5 | 491 | IPR039421 | - | |
Seca2g02854 | 497 | SMART | AAA_5 | 280 | 468 | IPR003593 | GO:0016887 | |
Seca2g02854 | 497 | Pfam | ABC transporter | 271 | 419 | IPR003439 | GO:0005524 | |
Seca2g02854 | 497 | ProSiteProfiles | ABC transporter integral membrane type-1 fused domain profile. | 1 | 219 | IPR011527 | GO:0005524|GO:0016020|GO:0055085|GO:0140359 | |
Seca2g02854 | 497 | SUPERFAMILY | ABC transporter transmembrane region | 6 | 237 | IPR036640 | GO:0005524|GO:0016020 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Seca2g02854 | Seca-Chr2 | 84685338 | 84692297 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Seca2g02854 | 5 | 493 | Calmodulin-binding Proteins | AT2G36910 | 34.104 | 2.23e-74 | 253 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Seca2g02854 | - | - | gmx:100797529 | 833.558 |