Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g02835 ATGAACTCCAAAAGCTTCTCAAATGCAAAGAAGAACCCATCATGGGTTCTCTTCACCATAATTTTTCTGTCATCTTTATCTCACTCACTTTCTGACCCAAGAATCTCAGAAGCTGGACACTATTGTGGCACAGCCAAAGCTCCAATGAAAGCCAATTACATCCCAAGTTTCATCAAAGAAATGGAGAGCCTCTCTCAGTCAGTGACCAACCACAATTGGGGTACTCACTTTGTCAACATCTCAGGATCCATTCCCATCTATGGCTTTGCACAATGCTTCCAAGACCTTTCACACACTGATTGTCTTCTCTGCTATGCTGCAAGCCGCACCAAGCTCCCTCGCTGTCTCCCTTCTCTCTCTGCTCGCATTTACCTTGATGGGTGCTTCCTTCGCTATGACAACTACAGCTTCTACTCAGAGGACACTGACCCTTTGAGGGATACTGTGAACTGCTCTTCTCAGAAGGGTGTGGAGGTTGGTGAAGCTGAGAGGTTGGAGCTGGAGAAGAGTGTTGGCAGAGTGGTTGATGTTGTGGCTATGGATGCTGTGGCTAAGGGAGCAGGTGGGTTTGCTGTGGGAGATGTTGAGGGTGTTTATGCATTGGCACAGTGTTGGAACACTGTTGGGAATGATGGGTGTAGAGATTGCTTGAGGAAAGCTGGGAAGGAGGTAAGAGGTTGCTTGCCTAAGAGGGAAGGGAGGGCCTTGAATGCTGGGTGTTATCTGAGATATTCAACAGAGAAATTCTACAATGAAAAAGGTGCATCAAATGGTGGAAATGGTTCTTTAAGAAGAGGAGCCATACTAGCAGCTGTGTTAGCAGCAGTTGCAGTTATAATGGTCACTCTCTCTGCCTCTTATGCAGCCTTCATAAAATTGTCAAAGATAAAAAAAGGTGAACATTTTGAAAATGAAATTACCTTTCATCACTCAGGATCAGGAAACAATAATCTTGGTCAGGTTTCCTCTTTCATCAGCAAATCTAGTTTGAATTACAAATATGAAACTCTTGAGAAGGCCACAGATTACTTCAACTCTTCAAGAAAAATAGGCCAAGGAGCAGCTGGTTCTGTTTTCAAAGGCATTCTCCCAAATGGGAAAGTTGTTGCCGTTAAGAGATTGATCTTCAATAACAGGCAATGGGTGGATGAGTTCTTCAATGAAGTGAATTTGATTAGCGGAATTGAACACAAGAACCTTGTCAAACTATTGGGTTGTAGCATTGAAGGCCCTGAGAGCCTTCTTGTGTATGAGTACTTGCCCAAAAAGAGTTTAGATCAATTTATCTTTGGTAACACACTAATCTGCTTTGCAGAAAAGAACAGAACTCAGATTCTAAATTGGAAGCAGCGGTTTAATATCATTCTTGGAACAGCAGAAGGGCTTGCTTATCTCCATGAAGGCTCTAAAATAAGAATCATCCACAGAGACATCAAAAGCAGCAATGTTCTCCTAGATGAGAATCTCACTCCTAAGATTGCAGATTTTGGTCTTGCCCGGTGTTTTTCTGCTGATAAGACACATTTGAGCACTGGCATTGCTGGAACACTAGGTTACATGGCTCCTGAGTACCTAGTTCGAGGACAACTTACAGATAAAGCTGATGTCTATAGTTTTGGGGTACTTGTTCTGGAGATAATATGTGGCAGGAGGAACAATGTCTTCAGAGAGGACTCTGGCTCACTTCTACAAACTGTTTGGAAACTTTACCGATCAAACACATTGATTGAGGCTGTTGATTCTAGCTTGGGAGATGATTTTCCTGCAACTGAAGCAACAAGGGTGTTTCACATTGGATTGCTTTGCACACAAGCTTCTGCTTCCCTGAGGCCATCCATGACCCAAGTTGTTCACATGTTAAGAAACTCAAATGTAGATGTTCCAACACCAAATCAACCCCCATTTTTGAACACTGGAATGCTAGACTCAGACAGCTCCATTAGGTCTTATAGCACAAACAGCTTTGTATCCAATGCCTTAAAGAAGATTGGAGTGTCCCATAGCTACTCAGAGTCATCTAGTTCACGAAACTCAGATCAGCCATCAAGAAGTGAAGAAACTATTATCCAAGCTTGA 2076 0.4287 MNSKSFSNAKKNPSWVLFTIIFLSSLSHSLSDPRISEAGHYCGTAKAPMKANYIPSFIKEMESLSQSVTNHNWGTHFVNISGSIPIYGFAQCFQDLSHTDCLLCYAASRTKLPRCLPSLSARIYLDGCFLRYDNYSFYSEDTDPLRDTVNCSSQKGVEVGEAERLELEKSVGRVVDVVAMDAVAKGAGGFAVGDVEGVYALAQCWNTVGNDGCRDCLRKAGKEVRGCLPKREGRALNAGCYLRYSTEKFYNEKGASNGGNGSLRRGAILAAVLAAVAVIMVTLSASYAAFIKLSKIKKGEHFENEITFHHSGSGNNNLGQVSSFISKSSLNYKYETLEKATDYFNSSRKIGQGAAGSVFKGILPNGKVVAVKRLIFNNRQWVDEFFNEVNLISGIEHKNLVKLLGCSIEGPESLLVYEYLPKKSLDQFIFGNTLICFAEKNRTQILNWKQRFNIILGTAEGLAYLHEGSKIRIIHRDIKSSNVLLDENLTPKIADFGLARCFSADKTHLSTGIAGTLGYMAPEYLVRGQLTDKADVYSFGVLVLEIICGRRNNVFREDSGSLLQTVWKLYRSNTLIEAVDSSLGDDFPATEATRVFHIGLLCTQASASLRPSMTQVVHMLRNSNVDVPTPNQPPFLNTGMLDSDSSIRSYSTNSFVSNALKKIGVSHSYSESSSSRNSDQPSRSEETIIQA. 692
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g02835 691 ProSiteProfiles Protein kinase domain profile. 344 636 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca2g02835 691 ProSiteProfiles Gnk2-homologous domain profile. 35 137 IPR002902 -
Seca2g02835 691 ProSitePatterns Serine/Threonine protein kinases active-site signature. 473 485 IPR008271 GO:0004672|GO:0006468
Seca2g02835 691 FunFam Cysteine-rich receptor-like protein kinase 2 420 628 - -
Seca2g02835 691 Gene3D Transferase(Phosphotransferase) domain 1 421 629 - -
Seca2g02835 691 SUPERFAMILY Protein kinase-like (PK-like) 330 651 IPR011009 -
Seca2g02835 691 MobiDBLite consensus disorder prediction 667 691 - -
Seca2g02835 691 Pfam Protein tyrosine and serine/threonine kinase 346 620 IPR001245 GO:0004672|GO:0006468
Seca2g02835 691 Pfam Salt stress response/antifungal 190 246 IPR002902 -
Seca2g02835 691 Pfam Salt stress response/antifungal 56 135 IPR002902 -
Seca2g02835 691 Gene3D Phosphorylase Kinase; domain 1 304 419 - -
Seca2g02835 691 ProSiteProfiles Gnk2-homologous domain profile. 145 249 IPR002902 -
Seca2g02835 691 Gene3D - 36 137 IPR038408 -
Seca2g02835 691 Gene3D - 161 249 IPR038408 -
Seca2g02835 691 SMART serkin_6 344 620 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca2g02835 691 FunFam Cysteine-rich receptor-like protein kinase 2 35 137 - -
Seca2g02835 691 FunFam Cysteine-rich receptor-like protein kinase 3 147 249 - -
Seca2g02835 691 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 87 670 - -
Seca2g02835 691 FunFam Cysteine-rich receptor-like protein kinase 2 310 419 - -
Seca2g02835 691 CDD STKc_IRAK 350 620 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g02835 Seca-Chr2 83793627 83798357 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g02835 16 517 Receptor kinase-like Gene Family AT5G40380 53.968 0.0 524
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Seca2g02835 PK_Tyr_Ser-Thr 1.8e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g02835 - - gmx:100790404 1039.64