Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g02831 ATGGCGTATCATCCAATCTTCGCAAAGAAATTTTCTTCTCATTCTGGAATTTTTCCAGAAAATCAAAATCCCAGCATAAAATTAGAGTTCCCTGACATGTTTCCCTTGCAACAGACCTTGTCTCGCTCACCACCTCCACCTCCACCAAATAGCACCACCCTCTTGTACCAAAACAACTTCCACCATATTCAGTGTCATCCCTTGAATGGGGCTAACCATCACCCTGGCAATTTTGTTTTGGAGGGTCTTCCCTCTAAAAGCCAATTTTCAATGATCCCAACTCCTCCTTCGGGTGATTCATACAACCCCATGCCATTTGCACCAAACAAAAATGAAATGGAAGCAATGCATGGCTACCTAAACAAAGGCAAGGGCATATGGGACTTTTCCCAGAAAATCCCTCTTCGGGATGGTGCAGCTTCACAACCTTATATGGGTCCTTCTCATTCATCATCATATGCACCATTGCTACTGCCAATGAAGCCTAAGTTTCAAGACCATCTTTCACCCATGGTTGGAACAGGAAATGGTAACTGGGACATTGACCAGAAAGTTGTCGATAATGACAAGTTGCAACAAAAGAGGGTGCAGAGTGAAAATCAACAAAAGGATACTAACACTGTCAAAGGCCAATGGACTAAAGAAGAGGATAGGGTACTTGTGCAATTGGTGAAACGCTTTGGGCTAAAAAAATGGTCGCAGATCGCGAAACTATTGAATGGCAGGATTGGGAAACAATGCAGAGAGAGATGGCATAACCATCTCCGACCAAACATTAGGAAGGAAGCATGGAATGAAGATGAGGACAAAATCCTCATTGAAGCTCATAAGGAAGTTGGGAACAAGTGGGCAGAAATTGCAAGGAGATTGCCGGGCCGCACTGAGAATACCATCAAGAACCATTGGAATGCCACAAAGAGGCGCATGAACACCAAGAAGAAGAACAAGCGCACTTGTGGTTCTAAAGGAAAACTGCTTCAAAACTACATAAGAGAAGTCATTGTAGCTGAAAAAGCTGGAAAGGAATTGAAGAAATCCATGAAAAAGATGAACATAAGGAGTGAGGATCACAATAATGACCTAAGTATCCTTTGTGTTCAGTATGAAAGCTCAGATGGTGACTTATGCTCTGAGGATTGGACTGCTCAGGATGAAGTTGGTTGGAGCATATTGCAACAACTTGTGCCAATGATGCATATTGGAGATGAAATTGCAAGTGAGTCTATTGTGGAAGATGGCACAGAGGATTATGTGGCTGCAATGGAGATGGAGCCAGAGGTTCCCATGAAGAAGGAAATGGATCTCATGGAGATGATCTATAAAAACCATTAA 1332 0.4279 MAYHPIFAKKFSSHSGIFPENQNPSIKLEFPDMFPLQQTLSRSPPPPPPNSTTLLYQNNFHHIQCHPLNGANHHPGNFVLEGLPSKSQFSMIPTPPSGDSYNPMPFAPNKNEMEAMHGYLNKGKGIWDFSQKIPLRDGAASQPYMGPSHSSSYAPLLLPMKPKFQDHLSPMVGTGNGNWDIDQKVVDNDKLQQKRVQSENQQKDTNTVKGQWTKEEDRVLVQLVKRFGLKKWSQIAKLLNGRIGKQCRERWHNHLRPNIRKEAWNEDEDKILIEAHKEVGNKWAEIARRLPGRTENTIKNHWNATKRRMNTKKKNKRTCGSKGKLLQNYIREVIVAEKAGKELKKSMKKMNIRSEDHNNDLSILCVQYESSDGDLCSEDWTAQDEVGWSILQQLVPMMHIGDEIASESIVEDGTEDYVAAMEMEPEVPMKKEMDLMEMIYKNH. 444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g02831 443 FunFam Transcriptional activator Myb isoform A 208 261 - -
Seca2g02831 443 SUPERFAMILY Homeodomain-like 207 302 IPR009057 -
Seca2g02831 443 Pfam Myb-like DNA-binding domain 212 270 - -
Seca2g02831 443 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 260 310 IPR017930 -
Seca2g02831 443 SMART sant 208 257 IPR001005 -
Seca2g02831 443 SMART sant 260 308 IPR001005 -
Seca2g02831 443 CDD SANT 263 306 IPR001005 -
Seca2g02831 443 CDD SANT 212 255 IPR001005 -
Seca2g02831 443 PANTHER MYB PROTEIN-RELATED 192 321 - -
Seca2g02831 443 ProSiteProfiles Myb-like domain profile. 204 255 IPR001005 -
Seca2g02831 443 ProSiteProfiles Myb-like domain profile. 256 306 IPR001005 -
Seca2g02831 443 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 204 259 IPR017930 -
Seca2g02831 443 Gene3D - 262 327 - -
Seca2g02831 443 Gene3D - 208 260 - -
Seca2g02831 443 Coils Coil 181 201 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g02831 Seca-Chr2 83676608 83679317 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g02831 201 333 MYB Transcription Factor Family AT4G18770 66.912 8.23e-59 197
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Seca2g02831 Myb_DNA-bind_6 4e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g02831 K09422 - lang:109354158 317.39
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca2g02831 2 83676608 83679317 Seca2g02831 2 83676608 83679317 ECH