Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g02830 ATGGCCTCTGTTGTTGGAAAACCTGGTGATGATTCCATGATTGTGGAGAAACTCCCAGAGGAGATTAATGAAATGAAGATCAAGGATGAGAAGGAGATGGAAGCAGCAATGGTGGATGGACATGGAACTGAAACTGGCCATATTATTGTGACTACTATTGGTGGTCGAAATGGTGAACCCAAACAGACAATAAGTTACATGGCGGAACGTGTTGTTGGACAAGGCTCATTCGGTATTGTGTTTCAGGCCAAGTGTCTTGAAACTGGAGAAACTGTGGCAATCAAGAAAGTTTTGCAGGATAAAAGATATAAGAACCGGGAATTGCAAACAATGCGCCTTCTTGATCATCCCAATGTTGTATCACTCAAACATTGTTTCTTTTCTACAACAGACAAAGATGACCTCTATCTCAATTTGGTACTTGAGTATGTACCTGAGACAGTATATCGTGTGGTGAAACACTATAGCAAGGCAAACCAGCGGATGCCCCTGATATATGTTAAACTTTACACATATCAGATTTGTAGAGCTTTGGCTTACATTCATGGTTGCGTAGGAGTGTGCCACAGGGACATTAAGCCACAGAATCTATTGGTTAATCCTCATACTCATCAAGTCAAGCTTTGTGATTTTGGAAGTGCTAAAGTTCTGGTCAAAGGTGAACCTAACATATCATATATTTGCTCTCGTTACTACCGAGCTCCTGAACTGATATTTGGTGCAACTGAGTATACTACTGCAATTGATATGTGGTCTGTGGGTTGTGTGCTTTCTGAGCTGCTCCTGGGACAGCCTCTGTTTCCTGGAGAAAGTGGAGTTGATCAACTTGTTGAAATTATCAAGGTACTTGGGACACCAACTCGTGAGGAAATAAAATGCATGAATCCAAATTACACAGAGTTTAAGTTCCCTCAAATCAAGGCTCACCCCTGGCATAAGATATTCCATAAGCGAATGCCCCCAGAAGCAGGAGATCTTGTTTCAAGACTTCTTCAATATTCTCCAAATTTACGATGCACTGCTTTGGAAGCATGTATCCACCCATTTTTTGATGAACTCCGTGATCCAAACACCCGTCTCCCTAACGGCCGCCCTATGCCGCCCCTCTTTAATTTCAAACCTCAAGAGCTGAAGGGAGTAACTTTGGAGCTGCTATGCAAACTTGTTCCAGAACATGCCCGGAAGCAGTGTCCATCCCTTAATTTCTAG 1209 0.426 MASVVGKPGDDSMIVEKLPEEINEMKIKDEKEMEAAMVDGHGTETGHIIVTTIGGRNGEPKQTISYMAERVVGQGSFGIVFQAKCLETGETVAIKKVLQDKRYKNRELQTMRLLDHPNVVSLKHCFFSTTDKDDLYLNLVLEYVPETVYRVVKHYSKANQRMPLIYVKLYTYQICRALAYIHGCVGVCHRDIKPQNLLVNPHTHQVKLCDFGSAKVLVKGEPNISYICSRYYRAPELIFGATEYTTAIDMWSVGCVLSELLLGQPLFPGESGVDQLVEIIKVLGTPTREEIKCMNPNYTEFKFPQIKAHPWHKIFHKRMPPEAGDLVSRLLQYSPNLRCTALEACIHPFFDELRDPNTRLPNGRPMPPLFNFKPQELKGVTLELLCKLVPEHARKQCPSLNF. 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g02830 402 Gene3D Transferase(Phosphotransferase) domain 1 146 394 - -
Seca2g02830 402 FunFam Shaggy-related protein kinase kappa 146 394 - -
Seca2g02830 402 CDD STKc_GSK3 61 353 IPR039192 -
Seca2g02830 402 PANTHER GLYCOGEN SYNTHASE KINASE-3 ALPHA 30 396 - -
Seca2g02830 402 ProSitePatterns Protein kinases ATP-binding region signature. 72 96 IPR017441 GO:0005524
Seca2g02830 402 Gene3D Phosphorylase Kinase; domain 1 50 145 - -
Seca2g02830 402 FunFam Glycogen synthase kinase-3 beta 50 145 - -
Seca2g02830 402 SMART serkin_6 66 350 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca2g02830 402 ProSiteProfiles Protein kinase domain profile. 66 350 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca2g02830 402 SUPERFAMILY Protein kinase-like (PK-like) 65 375 IPR011009 -
Seca2g02830 402 ProSitePatterns Serine/Threonine protein kinases active-site signature. 187 199 IPR008271 GO:0004672|GO:0006468
Seca2g02830 402 Pfam Protein kinase domain 66 350 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g02830 Seca-Chr2 83621621 83633107 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g02830 72 353 Core Cell Cycle Gene Families AT1G76540 35.495 6.61e-56 185
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_GSK Seca2g02830 Pkinase 5.8e-64 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g02830 K00924 - jre:108992860 772.696